Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF689 and GFF690 are separated by 13 nucleotides GFF690 and GFF691 are separated by 2 nucleotides GFF691 and GFF692 overlap by 4 nucleotides GFF692 and GFF693 are separated by 70 nucleotides
GFF689 - Cytochrome c oxidase polypeptide I (EC 1.9.3.1), at 370,838 to 372,460
GFF689
GFF690 - hypothetical protein, at 372,474 to 372,599
GFF690
GFF691 - Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1, at 372,602 to 373,213
GFF691
GFF692 - Probable transmembrane protein, at 373,210 to 373,422
GFF692
GFF693 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 373,493 to 374,374
GFF693
Position (kb) 372
373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 371.621 kb on + strand, within GFF689 at 371.621 kb on + strand, within GFF689 at 371.621 kb on + strand, within GFF689 at 371.622 kb on - strand, within GFF689 at 371.711 kb on + strand, within GFF689 at 371.712 kb on - strand, within GFF689 at 371.808 kb on - strand, within GFF689 at 371.999 kb on + strand, within GFF689 at 372.000 kb on - strand, within GFF689 at 372.000 kb on - strand, within GFF689 at 372.000 kb on - strand, within GFF689 at 372.000 kb on - strand, within GFF689 at 372.000 kb on - strand, within GFF689 at 372.002 kb on + strand, within GFF689 at 372.003 kb on - strand, within GFF689 at 372.023 kb on + strand, within GFF689 at 372.068 kb on + strand, within GFF689 at 372.068 kb on + strand, within GFF689 at 372.069 kb on - strand, within GFF689 at 372.072 kb on - strand, within GFF689 at 372.101 kb on + strand, within GFF689 at 372.102 kb on - strand, within GFF689 at 372.288 kb on - strand, within GFF689 at 372.288 kb on - strand, within GFF689 at 372.905 kb on + strand, within GFF691 at 372.905 kb on + strand, within GFF691 at 372.906 kb on - strand, within GFF691 at 372.906 kb on - strand, within GFF691 at 372.906 kb on - strand, within GFF691 at 373.019 kb on + strand, within GFF691 at 373.019 kb on + strand, within GFF691 at 373.112 kb on + strand, within GFF691 at 373.113 kb on + strand, within GFF691 at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.210 kb on - strand at 373.210 kb on - strand at 373.210 kb on - strand at 373.210 kb on - strand at 373.461 kb on + strand at 373.461 kb on + strand at 373.461 kb on + strand at 373.461 kb on + strand at 373.462 kb on - strand at 373.462 kb on - strand at 373.462 kb on - strand at 373.465 kb on + strand at 373.465 kb on + strand at 373.465 kb on + strand at 373.466 kb on - strand at 373.466 kb on - strand at 373.523 kb on + strand at 373.524 kb on - strand at 373.526 kb on + strand at 373.526 kb on + strand at 373.527 kb on - strand at 373.527 kb on - strand at 373.718 kb on + strand, within GFF693 at 373.718 kb on + strand, within GFF693 at 373.718 kb on + strand, within GFF693 at 374.123 kb on + strand, within GFF693 at 374.123 kb on + strand, within GFF693 at 374.136 kb on - strand, within GFF693 at 374.136 kb on - strand, within GFF693
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 371,621 + GFF689 0.48 -0.9 371,621 + GFF689 0.48 -0.3 371,621 + GFF689 0.48 -1.3 371,622 - GFF689 0.48 -1.3 371,711 + GFF689 0.54 -2.1 371,712 - GFF689 0.54 -1.1 371,808 - GFF689 0.60 -1.9 371,999 + GFF689 0.72 -1.3 372,000 - GFF689 0.72 -2.7 372,000 - GFF689 0.72 -2.1 372,000 - GFF689 0.72 -2.4 372,000 - GFF689 0.72 -1.8 372,000 - GFF689 0.72 -1.7 372,002 + GFF689 0.72 +0.1 372,003 - GFF689 0.72 -0.9 372,023 + GFF689 0.73 -1.3 372,068 + GFF689 0.76 -2.7 372,068 + GFF689 0.76 -0.3 372,069 - GFF689 0.76 -0.3 372,072 - GFF689 0.76 -2.2 372,101 + GFF689 0.78 -2.7 372,102 - GFF689 0.78 -1.4 372,288 - GFF689 0.89 -2.8 372,288 - GFF689 0.89 -3.3 372,905 + GFF691 0.50 -0.9 372,905 + GFF691 0.50 -1.8 372,906 - GFF691 0.50 -1.6 372,906 - GFF691 0.50 -2.3 372,906 - GFF691 0.50 -1.4 373,019 + GFF691 0.68 -2.1 373,019 + GFF691 0.68 -1.3 373,112 + GFF691 0.83 -3.4 373,113 + GFF691 0.83 -1.2 373,209 + -0.1 373,209 + -1.4 373,209 + +0.3 373,209 + +0.4 373,209 + -0.1 373,209 + +0.4 373,209 + -0.4 373,209 + +0.2 373,209 + -0.3 373,209 + -0.8 373,209 + -0.0 373,210 - -0.2 373,210 - -0.2 373,210 - +0.7 373,210 - +0.4 373,461 + +0.7 373,461 + -1.2 373,461 + -0.0 373,461 + +0.7 373,462 - -0.7 373,462 - -0.0 373,462 - -3.0 373,465 + -2.6 373,465 + +0.7 373,465 + -0.8 373,466 - -1.6 373,466 - -0.1 373,523 + -2.6 373,524 - +0.3 373,526 + -1.9 373,526 + -1.4 373,527 - -0.1 373,527 - -2.1 373,718 + GFF693 0.26 -1.6 373,718 + GFF693 0.26 -0.0 373,718 + GFF693 0.26 -1.9 374,123 + GFF693 0.71 -0.9 374,123 + GFF693 0.71 -0.6 374,136 - GFF693 0.73 +0.7 374,136 - GFF693 0.73 -0.3
Or see this region's nucleotide sequence