Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF571

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
242,493	+		GFF570	0.36	+0.5
242,493	+		GFF570	0.36	+0.1
242,493	+		GFF570	0.36	+0.3
242,493	+		GFF570	0.36	+0.0
242,493	+		GFF570	0.36	+0.5
242,494	-		GFF570	0.36	+0.6
242,494	-		GFF570	0.36	-0.3
242,604	+				-0.6
242,604	+				-0.7
242,604	+				+0.4
242,604	+				+0.0
242,604	+				+0.6
242,604	+				+0.6
242,604	+				-0.5
242,605	-				-0.2
242,605	-				+2.8
242,605	-				-1.2
242,822	-		GFF571	0.13	-0.1
243,325	+		GFF571	0.45	+0.2
243,325	+		GFF571	0.45	-0.8
243,326	-		GFF571	0.45	+0.4
243,326	-		GFF571	0.45	+0.4
243,376	+		GFF571	0.49	-0.1
243,376	+		GFF571	0.49	+0.8
243,376	+		GFF571	0.49	-0.5
243,376	+		GFF571	0.49	+0.2
243,404	-		GFF571	0.51	+0.1
243,404	-		GFF571	0.51	-0.5
243,404	-		GFF571	0.51	-0.1
243,415	+		GFF571	0.51	+0.4
243,415	+		GFF571	0.51	-0.2
243,415	+		GFF571	0.51	+0.5
243,415	+		GFF571	0.51	-0.7
243,883	+		GFF571	0.81	+0.1
243,883	+		GFF571	0.81	-0.1
243,884	-		GFF571	0.81	-0.8
243,884	-		GFF571	0.81	-0.2
244,194	+				-0.2
244,194	+				-0.7
244,194	+				-1.2
244,195	-				-1.1
244,212	+				-2.4
244,428	+		GFF572	0.43	-0.2
244,429	-		GFF572	0.44	-0.2
244,659	+		GFF572	0.85	-1.6
244,659	+		GFF572	0.85	-1.2
244,659	+		GFF572	0.85	-0.8