Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF57

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF55 and GFF56 are separated by 4 nucleotidesGFF56 and GFF57 are separated by 31 nucleotidesGFF57 and GFF58 overlap by 7 nucleotidesGFF58 and GFF59 overlap by 4 nucleotides GFF55 - EpsI protein, at 56,696 to 57,406 GFF55 GFF56 - Eight transmembrane protein EpsH, at 57,411 to 58,274 GFF56 GFF57 - hypothetical protein, at 58,306 to 58,716 GFF57 GFF58 - Tyrosine-protein kinase EpsD (EC 2.7.10.2), at 58,710 to 59,570 GFF58 GFF59 - Tyrosine-protein kinase Wzc (EC 2.7.10.2), at 59,567 to 60,940 GFF59 Position (kb) 58 59Strain fitness (log2 ratio) -1 0 1at 57.568 kb on + strand, within GFF56at 57.686 kb on - strand, within GFF56at 57.832 kb on + strand, within GFF56at 57.833 kb on - strand, within GFF56at 58.034 kb on - strand, within GFF56at 58.219 kb on + strandat 58.220 kb on - strandat 58.220 kb on - strandat 58.471 kb on + strand, within GFF57at 58.714 kb on + strandat 58.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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57,568 + GFF56 0.18 +0.7
57,686 - GFF56 0.32 -0.0
57,832 + GFF56 0.49 -0.2
57,833 - GFF56 0.49 -1.5
58,034 - GFF56 0.72 -0.5
58,219 + +0.3
58,220 - -0.0
58,220 - +0.5
58,471 + GFF57 0.40 -1.3
58,714 + -0.1
58,715 - -1.1

Or see this region's nucleotide sequence