Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5561

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
2,571,814	+		GFF5560	0.47	-0.2
2,571,815	-		GFF5560	0.47	+1.5
2,572,064	+		GFF5560	0.70	+1.5
2,572,064	+		GFF5560	0.70	-0.5
2,572,065	-		GFF5560	0.70	-0.4
2,572,181	-		GFF5560	0.80	-0.7
2,572,689	+		GFF5561	0.15	-1.6
2,572,689	+		GFF5561	0.15	-3.4
2,572,759	-		GFF5561	0.18	-0.9
2,573,376	+		GFF5561	0.50	-0.6
2,573,377	-		GFF5561	0.50	-3.3
2,573,530	-		GFF5561	0.57	-0.7
2,573,530	-		GFF5561	0.57	-1.1
2,573,679	+		GFF5561	0.65	-2.9
2,573,679	+		GFF5561	0.65	-1.6
2,573,716	+		GFF5561	0.67	-2.6
2,574,034	-		GFF5561	0.83	-0.9
2,574,279	+				-1.8
2,574,280	-				-1.1
2,574,280	-				-2.1
2,574,380	+				-0.0
2,574,380	+				+0.0
2,574,380	+				-0.4
2,574,380	+				-1.6
2,574,380	+				+1.1
2,574,381	-				-0.9
2,574,517	-				+0.0
2,574,517	-				+0.3
2,574,801	+		GFF5562	0.22	-0.6
2,574,802	-		GFF5562	0.22	-0.3
2,574,802	-		GFF5562	0.22	+0.9
2,574,900	+		GFF5562	0.30	-0.3
2,574,900	+		GFF5562	0.30	+0.0
2,574,900	+		GFF5562	0.30	+0.9
2,574,900	+		GFF5562	0.30	-0.3
2,574,901	-		GFF5562	0.30	-0.5
2,574,901	-		GFF5562	0.30	+0.7
2,574,901	-		GFF5562	0.30	+0.8
2,574,913	-		GFF5562	0.31	-0.6
2,574,913	-		GFF5562	0.31	-0.6
2,574,913	-		GFF5562	0.31	+0.6
2,575,215	+		GFF5562	0.55	+0.9
2,575,216	-		GFF5562	0.55	-0.8
2,575,216	-		GFF5562	0.55	-0.9
2,575,216	-		GFF5562	0.55	-0.2
2,575,266	+		GFF5562	0.59	+0.2
2,575,267	-		GFF5562	0.60	-0.4
2,575,306	-		GFF5562	0.63	+0.2
2,575,306	-		GFF5562	0.63	-0.0
2,575,306	-		GFF5562	0.63	-0.1
2,575,306	-		GFF5562	0.63	-0.3
2,575,348	-		GFF5562	0.66	+0.4