Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5509

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5507 and GFF5508 overlap by 4 nucleotidesGFF5508 and GFF5509 are separated by 180 nucleotidesGFF5509 and GFF5510 are separated by 38 nucleotidesGFF5510 and GFF5511 overlap by 7 nucleotides GFF5507 - Tripartite ATP-independent periplasmic transporter, DctQ component, at 2,508,847 to 2,509,338 GFF5507 GFF5508 - Gluconokinase (EC 2.7.1.12), at 2,509,335 to 2,509,841 GFF5508 GFF5509 - Gluconate utilization system Gnt-I transcriptional repressor, at 2,510,022 to 2,511,083 GFF5509 GFF5510 - Msl4750 protein, at 2,511,122 to 2,511,409 GFF5510 GFF5511 - Inner membrane protein CreD, at 2,511,403 to 2,512,755 GFF5511 Position (kb) 2510 2511 2512Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2509.606 kb on + strand, within GFF5508at 2509.901 kb on + strandat 2509.901 kb on + strandat 2509.950 kb on - strandat 2510.226 kb on + strand, within GFF5509at 2510.226 kb on + strand, within GFF5509at 2510.361 kb on + strand, within GFF5509at 2510.362 kb on - strand, within GFF5509at 2510.362 kb on - strand, within GFF5509at 2510.389 kb on - strand, within GFF5509at 2510.712 kb on + strand, within GFF5509at 2511.092 kb on - strandat 2511.131 kb on + strandat 2511.131 kb on + strandat 2511.131 kb on + strandat 2511.131 kb on + strandat 2511.137 kb on + strandat 2511.171 kb on - strand, within GFF5510at 2511.326 kb on + strand, within GFF5510at 2511.326 kb on + strand, within GFF5510at 2511.327 kb on - strand, within GFF5510at 2511.404 kb on + strandat 2511.405 kb on - strandat 2511.452 kb on + strandat 2511.453 kb on - strandat 2511.453 kb on - strandat 2511.566 kb on + strand, within GFF5511at 2511.567 kb on - strand, within GFF5511at 2511.632 kb on + strand, within GFF5511at 2511.674 kb on + strand, within GFF5511at 2511.755 kb on + strand, within GFF5511at 2511.756 kb on - strand, within GFF5511at 2511.756 kb on - strand, within GFF5511at 2511.839 kb on + strand, within GFF5511at 2511.839 kb on + strand, within GFF5511at 2511.867 kb on - strand, within GFF5511

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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2,509,606 + GFF5508 0.53 -0.7
2,509,901 + +1.0
2,509,901 + -0.2
2,509,950 - -0.1
2,510,226 + GFF5509 0.19 -1.9
2,510,226 + GFF5509 0.19 -3.9
2,510,361 + GFF5509 0.32 -3.7
2,510,362 - GFF5509 0.32 -3.0
2,510,362 - GFF5509 0.32 -2.7
2,510,389 - GFF5509 0.35 -3.0
2,510,712 + GFF5509 0.65 -1.5
2,511,092 - -0.6
2,511,131 + -0.3
2,511,131 + +0.9
2,511,131 + +0.1
2,511,131 + -0.5
2,511,137 + -0.9
2,511,171 - GFF5510 0.17 -0.1
2,511,326 + GFF5510 0.71 -0.9
2,511,326 + GFF5510 0.71 +0.7
2,511,327 - GFF5510 0.71 +0.1
2,511,404 + -1.2
2,511,405 - -0.1
2,511,452 + -0.4
2,511,453 - -1.3
2,511,453 - -0.0
2,511,566 + GFF5511 0.12 -0.3
2,511,567 - GFF5511 0.12 -1.6
2,511,632 + GFF5511 0.17 +0.0
2,511,674 + GFF5511 0.20 +0.1
2,511,755 + GFF5511 0.26 +0.2
2,511,756 - GFF5511 0.26 -0.2
2,511,756 - GFF5511 0.26 -0.1
2,511,839 + GFF5511 0.32 -2.4
2,511,839 + GFF5511 0.32 -0.7
2,511,867 - GFF5511 0.34 +0.4

Or see this region's nucleotide sequence