Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5410

Experiment: Ying_sugar7 rep A; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5408 and GFF5409 overlap by 26 nucleotidesGFF5409 and GFF5410 are separated by 13 nucleotidesGFF5410 and GFF5411 overlap by 4 nucleotidesGFF5411 and GFF5412 are separated by 9 nucleotides GFF5408 - Bll5686 protein, at 2,412,370 to 2,413,107 GFF5408 GFF5409 - Bll5685 protein, at 2,413,082 to 2,413,693 GFF5409 GFF5410 - Bll5684 protein, at 2,413,707 to 2,414,231 GFF5410 GFF5411 - hypothetical protein, at 2,414,228 to 2,414,917 GFF5411 GFF5412 - glycine-rich cell wall protein, at 2,414,927 to 2,415,436 GFF5412 Position (kb) 2413 2414 2415Strain fitness (log2 ratio) -1 0 1at 2413.562 kb on + strand, within GFF5409at 2413.848 kb on + strand, within GFF5410at 2413.849 kb on - strand, within GFF5410at 2413.980 kb on + strand, within GFF5410at 2413.980 kb on + strand, within GFF5410at 2413.981 kb on - strand, within GFF5410at 2413.981 kb on - strand, within GFF5410

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
remove
2,413,562 + GFF5409 0.78 +0.0
2,413,848 + GFF5410 0.27 +0.2
2,413,849 - GFF5410 0.27 +1.3
2,413,980 + GFF5410 0.52 +0.9
2,413,980 + GFF5410 0.52 +0.1
2,413,981 - GFF5410 0.52 +1.0
2,413,981 - GFF5410 0.52 -0.1

Or see this region's nucleotide sequence