Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5215

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
2,228,478	+		GFF5213	0.63	+0.2
2,228,877	+				+0.0
2,228,941	-				-0.3
2,229,120	+		GFF5214	0.52	+0.5
2,229,120	+		GFF5214	0.52	+0.3
2,229,120	+		GFF5214	0.52	+0.3
2,229,120	+		GFF5214	0.52	-0.1
2,229,121	-		GFF5214	0.52	+0.4
2,229,274	-				+0.7
2,229,662	+		GFF5215	0.12	+0.1
2,229,663	-		GFF5215	0.12	+0.1
2,229,663	-		GFF5215	0.12	-0.4
2,229,671	+		GFF5215	0.12	-0.6
2,229,672	-		GFF5215	0.12	-0.4
2,229,672	-		GFF5215	0.12	-0.1
2,229,672	-		GFF5215	0.12	-0.6
2,229,680	+		GFF5215	0.12	-0.2
2,229,981	-		GFF5215	0.23	-0.1
2,230,202	+		GFF5215	0.30	-0.3
2,230,203	-		GFF5215	0.30	-0.6
2,230,388	+		GFF5215	0.36	+0.8
2,230,388	+		GFF5215	0.36	-0.5
2,230,388	+		GFF5215	0.36	+0.2
2,230,388	+		GFF5215	0.36	+0.2
2,230,389	-		GFF5215	0.37	-0.1
2,230,389	-		GFF5215	0.37	+1.6
2,230,389	-		GFF5215	0.37	-0.1
2,230,397	+		GFF5215	0.37	+0.2
2,230,398	-		GFF5215	0.37	-0.7
2,230,398	-		GFF5215	0.37	-0.1
2,230,614	-		GFF5215	0.44	-0.9
2,230,614	-		GFF5215	0.44	+0.5
2,230,823	+		GFF5215	0.51	-0.4
2,230,824	-		GFF5215	0.51	+0.2
2,231,082	-		GFF5215	0.60	-0.5
2,231,310	-		GFF5215	0.68	-0.3
2,231,387	+		GFF5215	0.71	-0.9
2,231,388	-		GFF5215	0.71	-0.6
2,231,651	+		GFF5215	0.80	+0.2
2,231,651	+		GFF5215	0.80	+0.5
2,231,651	+		GFF5215	0.80	-1.2
2,231,651	+		GFF5215	0.80	+0.1
2,231,651	+		GFF5215	0.80	+0.1
2,231,652	-		GFF5215	0.80	+0.1
2,231,652	-		GFF5215	0.80	-0.8
2,231,652	-		GFF5215	0.80	-0.5
2,231,717	+		GFF5215	0.82	-0.2
2,231,717	+		GFF5215	0.82	+0.0
2,231,717	+		GFF5215	0.82	+0.2
2,231,744	+		GFF5215	0.83	-0.4
2,231,756	+		GFF5215	0.84	+0.7
2,232,093	-				+0.4
2,232,093	-				-0.3
2,232,143	+				-0.1
2,232,143	+				-0.1
2,232,144	-				+1.1
2,232,144	-				+0.7
2,232,367	+		GFF5216	0.14	+0.1
2,232,368	-		GFF5216	0.14	-0.3
2,232,368	-		GFF5216	0.14	+0.7
2,232,368	-		GFF5216	0.14	+0.7
2,232,368	-		GFF5216	0.14	-0.4
2,232,452	-		GFF5216	0.25	-0.8
2,232,551	-		GFF5216	0.37	-0.5
2,232,763	+		GFF5216	0.64	+0.3
2,232,763	+		GFF5216	0.64	+0.2
2,232,764	-		GFF5216	0.64	-0.5
2,232,764	-		GFF5216	0.64	+1.4
2,232,764	-		GFF5216	0.64	+0.2
2,232,868	+		GFF5216	0.77	+0.1
2,232,868	+		GFF5216	0.77	+0.0
2,232,868	+		GFF5216	0.77	-0.1
2,232,869	-		GFF5216	0.78	+0.7
2,233,119	+				+0.2
2,233,120	-				+0.0
2,233,120	-				-0.0
2,233,120	-				-0.6
2,233,126	+				-0.3
2,233,126	+				+0.7
2,233,159	+				-0.9