Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5112

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5111 and GFF5112 are separated by 88 nucleotidesGFF5112 and GFF5113 are separated by 10 nucleotidesGFF5113 and GFF5114 are separated by 2 nucleotides GFF5111 - Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-), at 2,122,856 to 2,124,223 GFF5111 GFF5112 - hypothetical protein, at 2,124,312 to 2,124,773 GFF5112 GFF5113 - Glutathione S-transferase (EC 2.5.1.18), at 2,124,784 to 2,125,434 GFF5113 GFF5114 - Hydrolase, at 2,125,437 to 2,126,174 GFF5114 Position (kb) 2124 2125Strain fitness (log2 ratio) -2 -1 0 1at 2123.798 kb on + strand, within GFF5111at 2123.799 kb on - strand, within GFF5111at 2124.137 kb on + strandat 2124.667 kb on - strand, within GFF5112at 2125.209 kb on - strand, within GFF5113

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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2,123,798 + GFF5111 0.69 -0.1
2,123,799 - GFF5111 0.69 -0.1
2,124,137 + -0.0
2,124,667 - GFF5112 0.77 -2.3
2,125,209 - GFF5113 0.65 -1.0

Or see this region's nucleotide sequence