Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5040

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
2,051,381	+				-0.5
2,051,382	-				+0.3
2,051,382	-				+0.7
2,051,635	+		GFF5039	0.25	+0.0
2,051,636	-		GFF5039	0.25	+0.3
2,051,686	+		GFF5039	0.31	+0.4
2,051,779	+		GFF5039	0.43	+0.4
2,051,780	-		GFF5039	0.43	+0.3
2,052,038	-		GFF5039	0.75	-0.6
2,052,104	-		GFF5039	0.83	-1.2
2,052,172	+				+1.9
2,052,173	-				-0.1
2,052,554	+		GFF5040	0.22	+0.1
2,052,554	+		GFF5040	0.22	-0.1
2,052,555	-		GFF5040	0.22	-0.8
2,052,555	-		GFF5040	0.22	-0.3
2,052,555	-		GFF5040	0.22	+0.1
2,052,720	-		GFF5040	0.34	-0.2
2,052,720	-		GFF5040	0.34	-0.9
2,052,720	-		GFF5040	0.34	-0.6
2,052,720	-		GFF5040	0.34	-0.3
2,052,842	+		GFF5040	0.43	+0.5
2,052,843	-		GFF5040	0.43	-0.8
2,052,998	+		GFF5040	0.55	-0.4
2,052,998	+		GFF5040	0.55	-0.2
2,052,999	-		GFF5040	0.55	+0.1
2,053,196	+		GFF5040	0.70	-0.9
2,053,311	-		GFF5040	0.78	+0.0
2,053,511	+				-0.6
2,053,511	+				-0.2
2,053,511	+				-0.8
2,053,797	-		GFF5041	0.13	+0.7
2,053,797	-		GFF5041	0.13	+0.5
2,053,797	-		GFF5041	0.13	+1.7
2,053,904	+		GFF5041	0.21	+0.3
2,053,905	-		GFF5041	0.21	+0.7
2,053,905	-		GFF5041	0.21	+0.2
2,053,973	+		GFF5041	0.26	-0.8
2,054,256	-		GFF5041	0.48	-0.3
2,054,367	-		GFF5041	0.57	+0.9
2,054,381	+		GFF5041	0.58	-0.1
2,054,408	+		GFF5041	0.60	+0.0