Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4889

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,899,455	+		GFF4888	0.49	-1.2
1,899,455	+		GFF4888	0.49	-0.9
1,899,455	+		GFF4888	0.49	-1.2
1,899,455	+		GFF4888	0.49	-1.3
1,899,455	+		GFF4888	0.49	-0.9
1,899,947	+		GFF4888	0.76	-1.2
1,899,947	+		GFF4888	0.76	-0.9
1,899,948	-		GFF4888	0.76	-1.1
1,899,948	-		GFF4888	0.76	-0.9
1,900,406	+				-1.4
1,900,406	+				-1.7
1,900,406	+				-0.7
1,900,407	-				-0.9
1,900,407	-				-0.6
1,900,448	+				-2.1
1,900,449	-				-1.3
1,900,619	+		GFF4889	0.13	-2.3
1,900,619	+		GFF4889	0.13	-2.1
1,900,619	+		GFF4889	0.13	-1.9
1,900,620	-		GFF4889	0.13	-0.9
1,900,829	+		GFF4889	0.26	-1.3
1,900,829	+		GFF4889	0.26	-2.3
1,900,829	+		GFF4889	0.26	-3.0
1,900,829	+		GFF4889	0.26	-2.5
1,900,829	+		GFF4889	0.26	-2.5
1,900,830	-		GFF4889	0.26	-1.3
1,900,830	-		GFF4889	0.26	-1.3
1,900,830	-		GFF4889	0.26	-1.6
1,902,069	-				-1.1
1,902,069	-				-1.6
1,902,074	+				+1.7
1,902,108	-				-1.3
1,902,188	+				-1.6
1,902,188	+				-0.5
1,902,188	+				-1.3
1,902,189	-				-0.9
1,902,189	-				+0.4
1,902,269	+				-1.3
1,902,269	+				-0.9
1,902,270	-				-0.6
1,902,270	-				-0.9
1,902,312	-				+0.1
1,902,312	-				-2.3
1,902,323	+				-1.6
1,902,323	+				-1.9
1,902,324	-				-0.6
1,902,324	-				-1.3
1,902,605	+		GFF4890	0.20	-0.6
1,902,605	+		GFF4890	0.20	-2.3
1,902,605	+		GFF4890	0.20	-0.5
1,902,605	+		GFF4890	0.20	-1.9
1,902,605	+		GFF4890	0.20	+0.1
1,902,605	+		GFF4890	0.20	-2.5
1,902,606	-		GFF4890	0.20	-0.0
1,902,606	-		GFF4890	0.20	-0.3
1,902,606	-		GFF4890	0.20	-0.0
1,902,606	-		GFF4890	0.20	-1.4
1,902,606	-		GFF4890	0.20	-2.5
1,902,684	-		GFF4890	0.23	-1.4
1,902,684	-		GFF4890	0.23	-0.9
1,902,684	-		GFF4890	0.23	-1.1
1,902,686	+		GFF4890	0.23	-0.9
1,902,686	+		GFF4890	0.23	-2.3
1,902,686	+		GFF4890	0.23	-1.9
1,902,686	+		GFF4890	0.23	-0.3
1,902,687	-		GFF4890	0.23	-1.9
1,902,771	-		GFF4890	0.27	-1.6
1,902,947	+		GFF4890	0.33	-1.4
1,902,948	-		GFF4890	0.33	-1.1
1,902,948	-		GFF4890	0.33	-2.1
1,902,950	+		GFF4890	0.33	-2.3
1,902,951	-		GFF4890	0.33	-0.9
1,902,951	-		GFF4890	0.33	-2.1
1,902,989	+		GFF4890	0.35	-1.6
1,902,989	+		GFF4890	0.35	-3.2
1,902,989	+		GFF4890	0.35	-1.3
1,902,990	-		GFF4890	0.35	-0.3