Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4887 and GFF4888 are separated by 71 nucleotides GFF4888 and GFF4889 are separated by 12 nucleotides
GFF4887 - putative membrane protein, at 1,897,145 to 1,898,497
GFF4887
GFF4888 - Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4), at 1,898,569 to 1,900,392
GFF4888
GFF4889 - Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12), at 1,900,405 to 1,902,051
GFF4889
Position (kb)
1898
1899
1900
1901 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1897.590 kb on - strand, within GFF4887 at 1897.590 kb on - strand, within GFF4887 at 1897.625 kb on + strand, within GFF4887 at 1897.625 kb on + strand, within GFF4887 at 1897.625 kb on + strand, within GFF4887 at 1897.718 kb on + strand, within GFF4887 at 1897.748 kb on + strand, within GFF4887 at 1897.748 kb on + strand, within GFF4887 at 1897.748 kb on + strand, within GFF4887 at 1897.748 kb on + strand, within GFF4887 at 1897.748 kb on + strand, within GFF4887 at 1897.748 kb on + strand, within GFF4887 at 1897.748 kb on + strand, within GFF4887 at 1897.749 kb on - strand, within GFF4887 at 1897.749 kb on - strand, within GFF4887 at 1897.754 kb on + strand, within GFF4887 at 1897.754 kb on + strand, within GFF4887 at 1897.754 kb on + strand, within GFF4887 at 1897.754 kb on + strand, within GFF4887 at 1897.754 kb on + strand, within GFF4887 at 1897.754 kb on + strand, within GFF4887 at 1897.754 kb on + strand, within GFF4887 at 1897.755 kb on - strand, within GFF4887 at 1897.755 kb on - strand, within GFF4887 at 1897.755 kb on - strand, within GFF4887 at 1897.794 kb on - strand, within GFF4887 at 1898.105 kb on + strand, within GFF4887 at 1898.106 kb on - strand, within GFF4887 at 1898.327 kb on + strand, within GFF4887 at 1898.570 kb on + strand at 1898.570 kb on + strand at 1898.570 kb on + strand at 1898.570 kb on + strand at 1898.571 kb on - strand at 1898.945 kb on + strand, within GFF4888 at 1898.945 kb on + strand, within GFF4888 at 1898.946 kb on - strand, within GFF4888 at 1899.233 kb on + strand, within GFF4888 at 1899.233 kb on + strand, within GFF4888 at 1899.233 kb on + strand, within GFF4888 at 1899.234 kb on - strand, within GFF4888 at 1899.234 kb on - strand, within GFF4888 at 1899.234 kb on - strand, within GFF4888 at 1899.234 kb on - strand, within GFF4888 at 1899.234 kb on - strand, within GFF4888 at 1899.455 kb on + strand, within GFF4888 at 1899.455 kb on + strand, within GFF4888 at 1899.455 kb on + strand, within GFF4888 at 1899.455 kb on + strand, within GFF4888 at 1899.455 kb on + strand, within GFF4888 at 1899.947 kb on + strand, within GFF4888 at 1899.947 kb on + strand, within GFF4888 at 1899.948 kb on - strand, within GFF4888 at 1899.948 kb on - strand, within GFF4888 at 1900.406 kb on + strand at 1900.406 kb on + strand at 1900.406 kb on + strand at 1900.407 kb on - strand at 1900.407 kb on - strand at 1900.448 kb on + strand at 1900.449 kb on - strand at 1900.619 kb on + strand, within GFF4889 at 1900.619 kb on + strand, within GFF4889 at 1900.619 kb on + strand, within GFF4889 at 1900.620 kb on - strand, within GFF4889 at 1900.829 kb on + strand, within GFF4889 at 1900.829 kb on + strand, within GFF4889 at 1900.829 kb on + strand, within GFF4889 at 1900.829 kb on + strand, within GFF4889 at 1900.829 kb on + strand, within GFF4889 at 1900.830 kb on - strand, within GFF4889 at 1900.830 kb on - strand, within GFF4889 at 1900.830 kb on - strand, within GFF4889
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 1,897,590 - GFF4887 0.33 +0.4 1,897,590 - GFF4887 0.33 +0.7 1,897,625 + GFF4887 0.35 +0.6 1,897,625 + GFF4887 0.35 +0.0 1,897,625 + GFF4887 0.35 +2.5 1,897,718 + GFF4887 0.42 +0.0 1,897,748 + GFF4887 0.45 +1.0 1,897,748 + GFF4887 0.45 +0.0 1,897,748 + GFF4887 0.45 -0.0 1,897,748 + GFF4887 0.45 -0.1 1,897,748 + GFF4887 0.45 -0.1 1,897,748 + GFF4887 0.45 +0.2 1,897,748 + GFF4887 0.45 +0.5 1,897,749 - GFF4887 0.45 -0.6 1,897,749 - GFF4887 0.45 -1.0 1,897,754 + GFF4887 0.45 -0.6 1,897,754 + GFF4887 0.45 -1.0 1,897,754 + GFF4887 0.45 +0.9 1,897,754 + GFF4887 0.45 +0.7 1,897,754 + GFF4887 0.45 +2.3 1,897,754 + GFF4887 0.45 +0.0 1,897,754 + GFF4887 0.45 -0.2 1,897,755 - GFF4887 0.45 -0.9 1,897,755 - GFF4887 0.45 -0.1 1,897,755 - GFF4887 0.45 +0.0 1,897,794 - GFF4887 0.48 -0.6 1,898,105 + GFF4887 0.71 -0.0 1,898,106 - GFF4887 0.71 +1.7 1,898,327 + GFF4887 0.87 +0.0 1,898,570 + +1.9 1,898,570 + +0.7 1,898,570 + +0.5 1,898,570 + +0.0 1,898,571 - +0.4 1,898,945 + GFF4888 0.21 -0.9 1,898,945 + GFF4888 0.21 -0.9 1,898,946 - GFF4888 0.21 -0.8 1,899,233 + GFF4888 0.36 -1.1 1,899,233 + GFF4888 0.36 -1.7 1,899,233 + GFF4888 0.36 -0.1 1,899,234 - GFF4888 0.36 -1.1 1,899,234 - GFF4888 0.36 -2.2 1,899,234 - GFF4888 0.36 -0.0 1,899,234 - GFF4888 0.36 -1.2 1,899,234 - GFF4888 0.36 -1.4 1,899,455 + GFF4888 0.49 -1.2 1,899,455 + GFF4888 0.49 -0.9 1,899,455 + GFF4888 0.49 -1.2 1,899,455 + GFF4888 0.49 -1.3 1,899,455 + GFF4888 0.49 -0.9 1,899,947 + GFF4888 0.76 -1.2 1,899,947 + GFF4888 0.76 -0.9 1,899,948 - GFF4888 0.76 -1.1 1,899,948 - GFF4888 0.76 -0.9 1,900,406 + -1.4 1,900,406 + -1.7 1,900,406 + -0.7 1,900,407 - -0.9 1,900,407 - -0.6 1,900,448 + -2.1 1,900,449 - -1.3 1,900,619 + GFF4889 0.13 -2.3 1,900,619 + GFF4889 0.13 -2.1 1,900,619 + GFF4889 0.13 -1.9 1,900,620 - GFF4889 0.13 -0.9 1,900,829 + GFF4889 0.26 -1.3 1,900,829 + GFF4889 0.26 -2.3 1,900,829 + GFF4889 0.26 -3.0 1,900,829 + GFF4889 0.26 -2.5 1,900,829 + GFF4889 0.26 -2.5 1,900,830 - GFF4889 0.26 -1.3 1,900,830 - GFF4889 0.26 -1.3 1,900,830 - GFF4889 0.26 -1.6
Or see this region's nucleotide sequence