Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4888

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4887 and GFF4888 are separated by 71 nucleotidesGFF4888 and GFF4889 are separated by 12 nucleotides GFF4887 - putative membrane protein, at 1,897,145 to 1,898,497 GFF4887 GFF4888 - Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4), at 1,898,569 to 1,900,392 GFF4888 GFF4889 - Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12), at 1,900,405 to 1,902,051 GFF4889 Position (kb) 1898 1899 1900 1901Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1897.590 kb on - strand, within GFF4887at 1897.590 kb on - strand, within GFF4887at 1897.625 kb on + strand, within GFF4887at 1897.625 kb on + strand, within GFF4887at 1897.625 kb on + strand, within GFF4887at 1897.718 kb on + strand, within GFF4887at 1897.748 kb on + strand, within GFF4887at 1897.748 kb on + strand, within GFF4887at 1897.748 kb on + strand, within GFF4887at 1897.748 kb on + strand, within GFF4887at 1897.748 kb on + strand, within GFF4887at 1897.748 kb on + strand, within GFF4887at 1897.748 kb on + strand, within GFF4887at 1897.749 kb on - strand, within GFF4887at 1897.749 kb on - strand, within GFF4887at 1897.754 kb on + strand, within GFF4887at 1897.754 kb on + strand, within GFF4887at 1897.754 kb on + strand, within GFF4887at 1897.754 kb on + strand, within GFF4887at 1897.754 kb on + strand, within GFF4887at 1897.754 kb on + strand, within GFF4887at 1897.754 kb on + strand, within GFF4887at 1897.755 kb on - strand, within GFF4887at 1897.755 kb on - strand, within GFF4887at 1897.755 kb on - strand, within GFF4887at 1897.794 kb on - strand, within GFF4887at 1898.105 kb on + strand, within GFF4887at 1898.106 kb on - strand, within GFF4887at 1898.327 kb on + strand, within GFF4887at 1898.570 kb on + strandat 1898.570 kb on + strandat 1898.570 kb on + strandat 1898.570 kb on + strandat 1898.571 kb on - strandat 1898.945 kb on + strand, within GFF4888at 1898.945 kb on + strand, within GFF4888at 1898.946 kb on - strand, within GFF4888at 1899.233 kb on + strand, within GFF4888at 1899.233 kb on + strand, within GFF4888at 1899.233 kb on + strand, within GFF4888at 1899.234 kb on - strand, within GFF4888at 1899.234 kb on - strand, within GFF4888at 1899.234 kb on - strand, within GFF4888at 1899.234 kb on - strand, within GFF4888at 1899.234 kb on - strand, within GFF4888at 1899.455 kb on + strand, within GFF4888at 1899.455 kb on + strand, within GFF4888at 1899.455 kb on + strand, within GFF4888at 1899.455 kb on + strand, within GFF4888at 1899.455 kb on + strand, within GFF4888at 1899.947 kb on + strand, within GFF4888at 1899.947 kb on + strand, within GFF4888at 1899.948 kb on - strand, within GFF4888at 1899.948 kb on - strand, within GFF4888at 1900.406 kb on + strandat 1900.406 kb on + strandat 1900.406 kb on + strandat 1900.407 kb on - strandat 1900.407 kb on - strandat 1900.448 kb on + strandat 1900.449 kb on - strandat 1900.619 kb on + strand, within GFF4889at 1900.619 kb on + strand, within GFF4889at 1900.619 kb on + strand, within GFF4889at 1900.620 kb on - strand, within GFF4889at 1900.829 kb on + strand, within GFF4889at 1900.829 kb on + strand, within GFF4889at 1900.829 kb on + strand, within GFF4889at 1900.829 kb on + strand, within GFF4889at 1900.829 kb on + strand, within GFF4889at 1900.830 kb on - strand, within GFF4889at 1900.830 kb on - strand, within GFF4889at 1900.830 kb on - strand, within GFF4889

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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1,897,590 - GFF4887 0.33 +0.4
1,897,590 - GFF4887 0.33 +0.7
1,897,625 + GFF4887 0.35 +0.6
1,897,625 + GFF4887 0.35 +0.0
1,897,625 + GFF4887 0.35 +2.5
1,897,718 + GFF4887 0.42 +0.0
1,897,748 + GFF4887 0.45 +1.0
1,897,748 + GFF4887 0.45 +0.0
1,897,748 + GFF4887 0.45 -0.0
1,897,748 + GFF4887 0.45 -0.1
1,897,748 + GFF4887 0.45 -0.1
1,897,748 + GFF4887 0.45 +0.2
1,897,748 + GFF4887 0.45 +0.5
1,897,749 - GFF4887 0.45 -0.6
1,897,749 - GFF4887 0.45 -1.0
1,897,754 + GFF4887 0.45 -0.6
1,897,754 + GFF4887 0.45 -1.0
1,897,754 + GFF4887 0.45 +0.9
1,897,754 + GFF4887 0.45 +0.7
1,897,754 + GFF4887 0.45 +2.3
1,897,754 + GFF4887 0.45 +0.0
1,897,754 + GFF4887 0.45 -0.2
1,897,755 - GFF4887 0.45 -0.9
1,897,755 - GFF4887 0.45 -0.1
1,897,755 - GFF4887 0.45 +0.0
1,897,794 - GFF4887 0.48 -0.6
1,898,105 + GFF4887 0.71 -0.0
1,898,106 - GFF4887 0.71 +1.7
1,898,327 + GFF4887 0.87 +0.0
1,898,570 + +1.9
1,898,570 + +0.7
1,898,570 + +0.5
1,898,570 + +0.0
1,898,571 - +0.4
1,898,945 + GFF4888 0.21 -0.9
1,898,945 + GFF4888 0.21 -0.9
1,898,946 - GFF4888 0.21 -0.8
1,899,233 + GFF4888 0.36 -1.1
1,899,233 + GFF4888 0.36 -1.7
1,899,233 + GFF4888 0.36 -0.1
1,899,234 - GFF4888 0.36 -1.1
1,899,234 - GFF4888 0.36 -2.2
1,899,234 - GFF4888 0.36 -0.0
1,899,234 - GFF4888 0.36 -1.2
1,899,234 - GFF4888 0.36 -1.4
1,899,455 + GFF4888 0.49 -1.2
1,899,455 + GFF4888 0.49 -0.9
1,899,455 + GFF4888 0.49 -1.2
1,899,455 + GFF4888 0.49 -1.3
1,899,455 + GFF4888 0.49 -0.9
1,899,947 + GFF4888 0.76 -1.2
1,899,947 + GFF4888 0.76 -0.9
1,899,948 - GFF4888 0.76 -1.1
1,899,948 - GFF4888 0.76 -0.9
1,900,406 + -1.4
1,900,406 + -1.7
1,900,406 + -0.7
1,900,407 - -0.9
1,900,407 - -0.6
1,900,448 + -2.1
1,900,449 - -1.3
1,900,619 + GFF4889 0.13 -2.3
1,900,619 + GFF4889 0.13 -2.1
1,900,619 + GFF4889 0.13 -1.9
1,900,620 - GFF4889 0.13 -0.9
1,900,829 + GFF4889 0.26 -1.3
1,900,829 + GFF4889 0.26 -2.3
1,900,829 + GFF4889 0.26 -3.0
1,900,829 + GFF4889 0.26 -2.5
1,900,829 + GFF4889 0.26 -2.5
1,900,830 - GFF4889 0.26 -1.3
1,900,830 - GFF4889 0.26 -1.3
1,900,830 - GFF4889 0.26 -1.6

Or see this region's nucleotide sequence