Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4888

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,897,590	-		GFF4887	0.33	+0.4
1,897,590	-		GFF4887	0.33	+0.7
1,897,625	+		GFF4887	0.35	+0.6
1,897,625	+		GFF4887	0.35	+0.0
1,897,625	+		GFF4887	0.35	+2.5
1,897,718	+		GFF4887	0.42	+0.0
1,897,748	+		GFF4887	0.45	+1.0
1,897,748	+		GFF4887	0.45	+0.0
1,897,748	+		GFF4887	0.45	-0.0
1,897,748	+		GFF4887	0.45	-0.1
1,897,748	+		GFF4887	0.45	-0.1
1,897,748	+		GFF4887	0.45	+0.2
1,897,748	+		GFF4887	0.45	+0.5
1,897,749	-		GFF4887	0.45	-0.6
1,897,749	-		GFF4887	0.45	-1.0
1,897,754	+		GFF4887	0.45	-0.6
1,897,754	+		GFF4887	0.45	-1.0
1,897,754	+		GFF4887	0.45	+0.9
1,897,754	+		GFF4887	0.45	+0.7
1,897,754	+		GFF4887	0.45	+2.3
1,897,754	+		GFF4887	0.45	+0.0
1,897,754	+		GFF4887	0.45	-0.2
1,897,755	-		GFF4887	0.45	-0.9
1,897,755	-		GFF4887	0.45	-0.1
1,897,755	-		GFF4887	0.45	+0.0
1,897,794	-		GFF4887	0.48	-0.6
1,898,105	+		GFF4887	0.71	-0.0
1,898,106	-		GFF4887	0.71	+1.7
1,898,327	+		GFF4887	0.87	+0.0
1,898,570	+				+1.9
1,898,570	+				+0.7
1,898,570	+				+0.5
1,898,570	+				+0.0
1,898,571	-				+0.4
1,898,945	+		GFF4888	0.21	-0.9
1,898,945	+		GFF4888	0.21	-0.9
1,898,946	-		GFF4888	0.21	-0.8
1,899,233	+		GFF4888	0.36	-1.1
1,899,233	+		GFF4888	0.36	-1.7
1,899,233	+		GFF4888	0.36	-0.1
1,899,234	-		GFF4888	0.36	-1.1
1,899,234	-		GFF4888	0.36	-2.2
1,899,234	-		GFF4888	0.36	-0.0
1,899,234	-		GFF4888	0.36	-1.2
1,899,234	-		GFF4888	0.36	-1.4
1,899,455	+		GFF4888	0.49	-1.2
1,899,455	+		GFF4888	0.49	-0.9
1,899,455	+		GFF4888	0.49	-1.2
1,899,455	+		GFF4888	0.49	-1.3
1,899,455	+		GFF4888	0.49	-0.9
1,899,947	+		GFF4888	0.76	-1.2
1,899,947	+		GFF4888	0.76	-0.9
1,899,948	-		GFF4888	0.76	-1.1
1,899,948	-		GFF4888	0.76	-0.9
1,900,406	+				-1.4
1,900,406	+				-1.7
1,900,406	+				-0.7
1,900,407	-				-0.9
1,900,407	-				-0.6
1,900,448	+				-2.1
1,900,449	-				-1.3
1,900,619	+		GFF4889	0.13	-2.3
1,900,619	+		GFF4889	0.13	-2.1
1,900,619	+		GFF4889	0.13	-1.9
1,900,620	-		GFF4889	0.13	-0.9
1,900,829	+		GFF4889	0.26	-1.3
1,900,829	+		GFF4889	0.26	-2.3
1,900,829	+		GFF4889	0.26	-3.0
1,900,829	+		GFF4889	0.26	-2.5
1,900,829	+		GFF4889	0.26	-2.5
1,900,830	-		GFF4889	0.26	-1.3
1,900,830	-		GFF4889	0.26	-1.3
1,900,830	-		GFF4889	0.26	-1.6