Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4779

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,788,172	+		GFF4778	0.11	+0.1
1,788,173	-		GFF4778	0.11	-0.1
1,788,187	+		GFF4778	0.13	-1.0
1,788,187	+		GFF4778	0.13	-0.3
1,788,187	+		GFF4778	0.13	-0.9
1,788,187	+		GFF4778	0.13	+0.0
1,788,187	+		GFF4778	0.13	+0.7
1,788,187	+		GFF4778	0.13	+1.1
1,788,188	-		GFF4778	0.13	-0.3
1,788,188	-		GFF4778	0.13	+1.2
1,788,314	-		GFF4778	0.28	+0.1
1,788,314	-		GFF4778	0.28	+0.2
1,788,314	-		GFF4778	0.28	+0.1
1,788,454	+		GFF4778	0.44	+0.3
1,788,455	-		GFF4778	0.44	+0.4
1,788,634	+		GFF4778	0.64	+0.3
1,788,986	+				-0.0
1,788,986	+				-0.1
1,788,986	+				-0.7
1,788,986	+				+0.7
1,788,986	+				-0.2
1,788,986	+				+0.0
1,788,987	-				-0.3
1,788,987	-				+0.5
1,788,987	-				+0.1
1,788,987	-				+0.5
1,788,987	-				+0.3
1,788,987	-				+0.7
1,788,987	-				-0.3
1,788,998	+				-0.4
1,788,998	+				-0.5
1,788,998	+				-0.6
1,788,998	+				+0.7
1,788,999	-				-0.9
1,789,000	+				-0.3
1,789,000	+				-0.2
1,789,001	-				+0.0
1,789,001	-				+0.6
1,789,001	-				+0.7
1,789,015	+				-0.7
1,789,016	-				-0.6
1,789,016	-				-0.1
1,789,017	+				+0.0
1,789,017	+				+0.3
1,789,017	+				-0.0
1,789,017	+				-0.0
1,789,017	+				-0.1
1,789,018	-				-0.2
1,789,018	-				+0.2
1,789,018	-				+0.3
1,789,019	-				-0.3
1,789,037	+				+1.0
1,789,037	+				+0.1
1,789,037	+				+0.7
1,789,038	-				+0.1
1,789,039	+				-0.1
1,789,039	+				-0.0
1,789,039	+				-0.2
1,789,040	-				+1.5
1,789,040	-				+0.6
1,789,054	+				-0.0
1,789,054	+				-0.1
1,789,055	-				+0.2
1,789,078	+				-3.0
1,789,088	-				+0.1
1,789,240	+		GFF4779	0.12	-0.9
1,789,486	+		GFF4779	0.30	-0.3
1,789,486	+		GFF4779	0.30	-1.7
1,789,486	+		GFF4779	0.30	-1.0
1,789,486	+		GFF4779	0.30	-1.7
1,789,486	+		GFF4779	0.30	-2.1
1,789,487	-		GFF4779	0.30	-1.8
1,789,487	-		GFF4779	0.30	-1.8
1,789,487	-		GFF4779	0.30	-1.4
1,789,487	-		GFF4779	0.30	-2.0
1,789,487	-		GFF4779	0.30	-0.8
1,789,487	-		GFF4779	0.30	+1.7
1,789,487	-		GFF4779	0.30	-1.2
1,789,487	-		GFF4779	0.30	-1.0
1,789,487	-		GFF4779	0.30	-1.9
1,789,488	+		GFF4779	0.30	-0.3
1,789,488	+		GFF4779	0.30	-1.5
1,789,489	-		GFF4779	0.30	-0.6
1,789,489	-		GFF4779	0.30	-1.4
1,789,552	-		GFF4779	0.35	-1.3
1,789,553	-		GFF4779	0.35	-0.5
1,789,553	-		GFF4779	0.35	-0.4
1,789,553	-		GFF4779	0.35	-1.6
1,789,553	-		GFF4779	0.35	-1.5
1,789,561	+		GFF4779	0.35	-0.5
1,789,561	+		GFF4779	0.35	-0.7
1,789,561	+		GFF4779	0.35	-2.9
1,789,562	-		GFF4779	0.36	-2.6
1,789,562	-		GFF4779	0.36	-1.5
1,789,562	-		GFF4779	0.36	-0.8
1,789,562	-		GFF4779	0.36	-1.1
1,789,562	-		GFF4779	0.36	-1.6
1,789,772	-		GFF4779	0.51	-0.9
1,789,772	-		GFF4779	0.51	-1.4
1,789,798	+		GFF4779	0.53	+1.4
1,789,798	+		GFF4779	0.53	+0.7
1,789,840	+		GFF4779	0.56	-1.1
1,789,907	-		GFF4779	0.61	-2.6
1,789,907	-		GFF4779	0.61	-0.9
1,789,912	+		GFF4779	0.61	-1.1
1,789,912	-		GFF4779	0.61	-1.6
1,789,913	-		GFF4779	0.61	-0.9
1,789,913	-		GFF4779	0.61	-2.4
1,789,969	+		GFF4779	0.65	-1.7
1,789,970	-		GFF4779	0.65	-1.3
1,789,970	-		GFF4779	0.65	-0.8
1,789,970	-		GFF4779	0.65	-1.5
1,789,978	+		GFF4779	0.66	-1.2
1,789,979	-		GFF4779	0.66	-2.2
1,789,979	-		GFF4779	0.66	-0.9
1,790,008	+		GFF4779	0.68	-2.5
1,790,008	+		GFF4779	0.68	-0.8
1,790,008	+		GFF4779	0.68	-1.4
1,790,009	-		GFF4779	0.68	-1.7
1,790,009	-		GFF4779	0.68	-0.9
1,790,009	-		GFF4779	0.68	-0.8
1,790,012	-		GFF4779	0.68	-1.3
1,790,012	-		GFF4779	0.68	-1.3
1,790,233	+		GFF4779	0.84	-1.2
1,790,233	+		GFF4779	0.84	-1.6
1,790,233	+		GFF4779	0.84	-1.5
1,790,234	-		GFF4779	0.84	-1.1
1,790,234	-		GFF4779	0.84	-1.5
1,790,257	+		GFF4779	0.86	-0.3
1,790,258	-		GFF4779	0.86	-1.2
1,790,483	-				-0.3
1,790,484	+				+0.6
1,790,485	-				-0.1
1,790,559	-				-0.0
1,790,576	+		GFF4780	0.12	+0.4
1,790,576	+		GFF4780	0.12	+0.4
1,790,577	-		GFF4780	0.12	-0.5
1,790,577	-		GFF4780	0.12	+0.2
1,790,577	-		GFF4780	0.12	+0.1
1,790,960	+		GFF4780	0.70	-0.3
1,790,960	+		GFF4780	0.70	-0.5
1,790,961	-		GFF4780	0.70	+1.0
1,790,961	-		GFF4780	0.70	-0.1
1,791,190	+				-0.3
1,791,208	+				+0.1
1,791,209	-				-0.1
1,791,209	-				+0.1
1,791,209	-				-0.3
1,791,209	-				+0.7
1,791,209	-				+0.0
1,791,232	+				-0.3
1,791,232	+				+0.7
1,791,232	+				-0.0
1,791,232	+				+0.1
1,791,232	+				+0.1
1,791,232	+				+0.1
1,791,232	+				-0.1
1,791,233	-				-0.5
1,791,233	-				+0.5
1,791,233	-				-0.6
1,791,233	-				+1.4
1,791,281	-				+2.7
1,791,406	+		GFF4781	0.16	-0.3
1,791,406	+		GFF4781	0.16	-0.5
1,791,436	+		GFF4781	0.18	-0.0
1,791,436	+		GFF4781	0.18	-1.1
1,791,436	+		GFF4781	0.18	-0.2
1,791,436	+		GFF4781	0.18	-1.0
1,791,436	+		GFF4781	0.18	+0.1
1,791,436	+		GFF4781	0.18	+0.8
1,791,436	+		GFF4781	0.18	-0.2
1,791,436	+		GFF4781	0.18	+0.1
1,791,436	+		GFF4781	0.18	-0.3
1,791,436	+		GFF4781	0.18	-0.0
1,791,436	+		GFF4781	0.18	+0.1
1,791,437	-		GFF4781	0.18	-0.0
1,791,437	-		GFF4781	0.18	-0.0
1,791,437	-		GFF4781	0.18	+0.8
1,791,437	-		GFF4781	0.18	-0.5
1,791,437	-		GFF4781	0.18	+0.3