Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4731

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,683,033	+		GFF4730	0.58	+0.0
1,683,033	+		GFF4730	0.58	-0.0
1,683,034	-		GFF4730	0.58	+0.4
1,683,048	+		GFF4730	0.59	+0.0
1,683,048	+		GFF4730	0.59	+0.5
1,683,049	-		GFF4730	0.59	-0.3
1,683,049	-		GFF4730	0.59	+0.7
1,683,066	+		GFF4730	0.59	-0.6
1,683,066	+		GFF4730	0.59	-0.4
1,683,066	+		GFF4730	0.59	-0.2
1,683,067	-		GFF4730	0.59	-0.3
1,683,067	-		GFF4730	0.59	+0.7
1,683,067	-		GFF4730	0.59	-0.5
1,683,067	-		GFF4730	0.59	-0.2
1,683,067	-		GFF4730	0.59	-0.6
1,683,067	-		GFF4730	0.59	+1.0
1,683,165	+		GFF4730	0.64	+0.3
1,683,166	-		GFF4730	0.64	-0.4
1,683,222	+		GFF4730	0.67	+0.4
1,683,223	-		GFF4730	0.67	-0.1
1,683,223	-		GFF4730	0.67	+0.2
1,683,253	-		GFF4730	0.69	-0.0
1,683,372	+		GFF4730	0.74	+0.4
1,683,372	+		GFF4730	0.74	-0.1
1,683,373	-		GFF4730	0.74	+0.9
1,683,432	+		GFF4730	0.77	+0.0
1,683,432	+		GFF4730	0.77	+1.0
1,683,432	+		GFF4730	0.77	+0.2
1,683,432	+		GFF4730	0.77	+0.6
1,683,433	-		GFF4730	0.77	+0.7
1,683,918	+				-0.9
1,683,918	+				-3.8
1,683,954	+				-4.5
1,683,954	+				-1.3
1,683,954	+				-3.3
1,683,954	+				-2.6
1,683,954	+				-4.9
1,683,954	+				-3.5
1,683,954	+				-4.6
1,683,954	+				-1.9
1,683,955	-				-3.2
1,683,955	-				-4.9
1,683,955	-				-3.0
1,683,955	-				-5.1
1,684,155	+		GFF4731	0.19	-4.3
1,684,155	+		GFF4731	0.19	-1.6
1,684,155	+		GFF4731	0.19	-3.8
1,684,156	-		GFF4731	0.19	-5.3
1,684,438	-		GFF4731	0.41	-5.3
1,684,452	+		GFF4731	0.42	-4.7
1,684,453	-		GFF4731	0.42	-1.9
1,684,453	-		GFF4731	0.42	-4.7
1,684,464	+		GFF4731	0.43	-5.0
1,684,590	+		GFF4731	0.52	-5.0
1,684,590	+		GFF4731	0.52	-4.4
1,684,591	-		GFF4731	0.52	-4.0
1,684,591	-		GFF4731	0.52	-5.7
1,684,591	-		GFF4731	0.52	-3.8
1,684,591	-		GFF4731	0.52	-3.9
1,684,591	-		GFF4731	0.52	-2.8
1,684,591	-		GFF4731	0.52	-6.1
1,684,659	+		GFF4731	0.57	-1.6
1,684,659	+		GFF4731	0.57	-0.9
1,684,659	+		GFF4731	0.57	-4.0
1,684,659	+		GFF4731	0.57	-2.1
1,684,659	+		GFF4731	0.57	-1.3
1,684,660	-		GFF4731	0.58	-6.1
1,684,660	-		GFF4731	0.58	-4.0
1,684,782	+		GFF4731	0.67	-2.3
1,684,782	+		GFF4731	0.67	-2.9
1,684,783	-		GFF4731	0.67	-1.6
1,684,783	-		GFF4731	0.67	-3.2
1,684,885	-		GFF4731	0.75	-5.5
1,684,885	-		GFF4731	0.75	-3.8
1,684,885	-		GFF4731	0.75	-4.8
1,684,929	+		GFF4731	0.78	-4.4
1,684,929	+		GFF4731	0.78	-3.0
1,684,929	+		GFF4731	0.78	-4.2
1,684,929	+		GFF4731	0.78	-3.6
1,684,929	+		GFF4731	0.78	-3.6
1,684,929	+		GFF4731	0.78	-6.5
1,684,929	+		GFF4731	0.78	-2.8
1,684,929	+		GFF4731	0.78	-2.5
1,684,929	+		GFF4731	0.78	-2.6
1,684,929	+		GFF4731	0.78	-5.4
1,684,929	+		GFF4731	0.78	-4.8
1,684,930	-		GFF4731	0.78	-6.0
1,684,930	-		GFF4731	0.78	-4.3
1,684,930	-		GFF4731	0.78	-3.8
1,684,930	-		GFF4731	0.78	-3.0
1,685,082	+		GFF4731	0.89	-4.2
1,685,082	+		GFF4731	0.89	-4.3
1,685,083	-		GFF4731	0.89	-2.3
1,685,083	-		GFF4731	0.89	-4.2
1,685,083	-		GFF4731	0.89	-3.4
1,685,083	-		GFF4731	0.89	-4.3
1,685,083	-		GFF4731	0.89	-6.3
1,685,193	+				-2.3
1,685,193	+				-6.9
1,685,193	+				-4.2
1,685,193	+				-1.9
1,685,193	+				-2.1
1,685,193	+				-5.8
1,685,193	+				-3.7
1,685,193	+				-1.6
1,685,193	+				-3.9
1,685,193	+				-3.1
1,685,193	+				-5.6
1,685,193	+				-3.4
1,685,193	+				-3.3
1,685,193	+				-7.5
1,685,194	-				-5.6
1,685,194	-				-1.6
1,685,194	-				-4.4
1,685,194	-				-1.3
1,685,194	-				-3.5
1,685,194	-				-4.2
1,685,194	-				-6.6
1,685,204	+				-4.7
1,685,204	+				-6.4
1,685,204	+				-4.9
1,685,205	-				-2.3
1,685,242	+				-0.2
1,685,243	-				-0.3
1,685,264	+				-0.3
1,685,265	-				-0.1
1,685,306	+				+0.0
1,685,306	+				-1.0
1,685,306	+				-0.4
1,685,306	+				+0.1
1,685,306	+				+0.3
1,685,306	+				-0.4
1,685,306	+				+1.1
1,685,306	+				-0.3
1,685,307	-				-0.0
1,685,307	-				-0.2
1,685,348	+				-0.2
1,685,348	+				-0.2
1,685,348	+				+0.9
1,685,348	+				+0.1
1,685,348	+				+0.7
1,685,348	+				+0.1
1,685,348	+				-0.0
1,685,348	+				-0.9
1,685,349	-				-1.6
1,685,349	-				+0.3
1,685,349	-				-0.6
1,685,349	-				-0.4
1,685,349	-				-0.3
1,685,349	-				-0.4
1,685,349	-				+0.8
1,685,510	+				-0.4
1,685,768	+		GFF4732	0.25	+0.7