Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4679

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,628,847	-		GFF4678	0.78	-0.1
1,628,930	+		GFF4678	0.82	+0.5
1,628,930	+		GFF4678	0.82	+0.2
1,628,930	+		GFF4678	0.82	-0.2
1,629,304	+				+0.1
1,629,306	-				-0.2
1,629,666	+				-0.8
1,629,667	-				-0.4
1,629,667	-				-1.4
1,629,830	+				+0.5
1,629,830	+				+0.7
1,629,996	-		GFF4679	0.27	-0.3
1,631,085	+		GFF4680	0.45	+0.4
1,631,100	+		GFF4680	0.47	+0.1
1,631,101	-		GFF4680	0.47	+0.1
1,631,101	-		GFF4680	0.47	+1.4
1,631,118	+		GFF4680	0.49	-1.3
1,631,119	-		GFF4680	0.49	-0.6
1,631,119	-		GFF4680	0.49	-0.2
1,631,124	+		GFF4680	0.49	+0.1
1,631,249	+		GFF4680	0.61	-0.7
1,631,250	+		GFF4680	0.61	+1.7
1,631,250	+		GFF4680	0.61	+0.4
1,631,340	+		GFF4680	0.70	+0.0
1,631,340	+		GFF4680	0.70	+0.9
1,631,340	+		GFF4680	0.70	+0.1
1,631,341	-		GFF4680	0.70	+0.3
1,631,418	+		GFF4680	0.77	+0.6
1,631,418	+		GFF4680	0.77	-0.6
1,631,419	-		GFF4680	0.77	+0.2
1,631,419	-		GFF4680	0.77	+0.0
1,631,478	+		GFF4680	0.83	-0.4