Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4653

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,603,442	+				-1.1
1,603,442	+				-0.7
1,603,538	-				-0.4
1,603,598	+				-1.1
1,603,598	+				+0.4
1,603,903	+		GFF4652	0.39	-0.4
1,604,107	+		GFF4652	0.63	-0.3
1,604,107	+		GFF4652	0.63	-0.2
1,604,108	-		GFF4652	0.64	+0.0
1,604,108	-		GFF4652	0.64	+0.0
1,604,212	+		GFF4652	0.76	+0.1
1,604,212	+		GFF4652	0.76	-0.2
1,604,212	+		GFF4652	0.76	-0.3
1,604,212	+		GFF4652	0.76	+0.3
1,604,213	-		GFF4652	0.76	+1.4
1,604,213	-		GFF4652	0.76	+0.1
1,604,422	-				+0.8
1,604,476	+				-0.1
1,604,476	+				-0.5
1,604,819	-		GFF4653	0.43	+0.1
1,605,028	+		GFF4653	0.67	+0.1
1,605,028	+		GFF4653	0.67	+0.3
1,605,029	-		GFF4653	0.67	+0.3
1,605,127	+		GFF4653	0.77	+0.3
1,605,128	-		GFF4653	0.78	-0.9
1,605,217	+		GFF4653	0.87	+0.1
1,605,218	-		GFF4653	0.88	-1.6
1,605,370	+				+0.1
1,605,371	-				+0.2
1,605,641	+		GFF4654	0.25	-1.2
1,605,642	-		GFF4654	0.25	-0.7
1,605,657	-		GFF4654	0.26	+0.2
1,605,657	-		GFF4654	0.26	-0.3
1,605,735	-		GFF4654	0.33	-1.2
1,605,736	-		GFF4654	0.33	+0.2
1,605,848	+		GFF4654	0.44	+0.0
1,605,849	-		GFF4654	0.44	-0.2
1,605,977	+		GFF4654	0.55	-0.3
1,605,977	+		GFF4654	0.55	-0.4
1,606,094	-		GFF4654	0.66	+1.5
1,606,094	-		GFF4654	0.66	+1.5
1,606,097	+		GFF4654	0.66	+0.1
1,606,097	+		GFF4654	0.66	-0.6
1,606,098	-		GFF4654	0.66	+0.0
1,606,121	+		GFF4654	0.68	-0.0
1,606,121	+		GFF4654	0.68	-0.1
1,606,122	-		GFF4654	0.69	+0.5
1,606,122	-		GFF4654	0.69	+0.4
1,606,139	+		GFF4654	0.70	+0.0
1,606,172	+		GFF4654	0.73	+0.3
1,606,172	+		GFF4654	0.73	+0.3