Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4563

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,502,570	+		GFF4562	0.83	+0.2
1,502,570	+		GFF4562	0.83	+1.9
1,502,570	+		GFF4562	0.83	+0.2
1,502,570	+		GFF4562	0.83	+0.8
1,502,570	+		GFF4562	0.83	-0.1
1,502,570	+		GFF4562	0.83	+0.6
1,502,571	-		GFF4562	0.83	-0.4
1,502,571	-		GFF4562	0.83	-0.3
1,502,571	-		GFF4562	0.83	-0.1
1,502,571	-		GFF4562	0.83	+0.1
1,502,571	-		GFF4562	0.83	-2.0
1,502,571	-		GFF4562	0.83	-0.5
1,502,571	-		GFF4562	0.83	-0.3
1,503,121	+				-0.0
1,503,122	-				-0.3
1,503,122	-				-0.3
1,503,122	-				+0.6
1,503,122	-				-0.1
1,503,163	-				+0.9
1,503,380	+				-2.7
1,503,380	+				+0.1
1,503,381	-				-0.3
1,503,381	-				-0.6
1,503,381	-				-0.3
1,503,381	-				+0.7
1,503,407	+				+0.4
1,503,408	-				-1.1
1,503,716	+		GFF4563	0.18	+0.4
1,503,717	-		GFF4563	0.18	-0.1
1,503,758	+		GFF4563	0.19	-0.5
1,503,758	+		GFF4563	0.19	-0.8
1,503,759	-		GFF4563	0.19	-0.2
1,503,759	-		GFF4563	0.19	-1.3
1,503,759	-		GFF4563	0.19	-0.9
1,503,759	-		GFF4563	0.19	-0.1
1,503,938	+		GFF4563	0.26	-0.1
1,503,938	+		GFF4563	0.26	-0.2
1,503,938	+		GFF4563	0.26	-0.0
1,503,938	+		GFF4563	0.26	-0.8
1,503,939	-		GFF4563	0.26	-0.3
1,503,939	-		GFF4563	0.26	-0.8
1,503,939	-		GFF4563	0.26	+0.1
1,503,939	-		GFF4563	0.26	-1.1
1,504,083	-		GFF4563	0.31	-1.6
1,504,088	+		GFF4563	0.32	-1.4
1,504,170	-		GFF4563	0.35	+0.3
1,504,170	-		GFF4563	0.35	+0.5
1,504,184	+		GFF4563	0.35	-0.7
1,504,185	-		GFF4563	0.35	-1.0
1,504,289	+		GFF4563	0.39	-0.9
1,504,289	+		GFF4563	0.39	-0.5
1,504,290	-		GFF4563	0.39	-0.0
1,504,290	-		GFF4563	0.39	-0.3
1,504,418	+		GFF4563	0.44	-1.0
1,504,419	-		GFF4563	0.44	-0.9
1,504,419	-		GFF4563	0.44	-0.8
1,504,470	-		GFF4563	0.46	-1.6
1,504,545	-		GFF4563	0.49	-1.0
1,504,545	-		GFF4563	0.49	-0.7
1,504,545	-		GFF4563	0.49	-1.8
1,504,601	+		GFF4563	0.51	-0.3
1,504,602	-		GFF4563	0.51	-0.7
1,504,739	+		GFF4563	0.56	-0.3
1,504,739	+		GFF4563	0.56	-0.7
1,504,740	-		GFF4563	0.56	-0.6
1,504,740	-		GFF4563	0.56	-1.2
1,504,793	+		GFF4563	0.58	-1.3
1,504,793	+		GFF4563	0.58	-1.4
1,504,835	+		GFF4563	0.59	+0.0
1,504,835	+		GFF4563	0.59	-0.3
1,504,835	+		GFF4563	0.59	-1.1
1,504,835	+		GFF4563	0.59	+0.3
1,504,994	+		GFF4563	0.65	+0.3
1,504,995	-		GFF4563	0.65	-0.5
1,504,995	-		GFF4563	0.65	+0.7
1,504,995	-		GFF4563	0.65	-0.2
1,504,997	+		GFF4563	0.65	-0.0
1,504,997	+		GFF4563	0.65	-0.6
1,505,339	+		GFF4563	0.78	-0.1
1,505,339	+		GFF4563	0.78	-1.6
1,505,340	-		GFF4563	0.78	-0.6
1,505,870	+				-0.1
1,506,181	-		GFF4564	0.30	+0.5
1,506,348	+		GFF4564	0.51	-0.4
1,506,348	+		GFF4564	0.51	+0.3
1,506,348	+		GFF4564	0.51	+0.1
1,506,349	-		GFF4564	0.51	+0.3
1,506,349	-		GFF4564	0.51	+1.2
1,506,349	-		GFF4564	0.51	+0.8
1,506,429	+		GFF4564	0.60	+1.2
1,506,612	+		GFF4564	0.83	+0.9
1,506,612	+		GFF4564	0.83	+0.3
1,506,612	+		GFF4564	0.83	+0.4
1,506,612	+		GFF4564	0.83	+0.4
1,506,612	+		GFF4564	0.83	+1.0
1,506,613	-		GFF4564	0.83	-0.2
1,506,675	+				+0.2
1,506,675	+				+0.7
1,506,676	-				+1.3
1,506,676	-				+0.5
1,506,741	+				+0.1
1,506,741	+				+0.9
1,506,741	+				+0.5
1,506,742	-				+0.6