Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4515

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,439,416	+		GFF4513	0.89	-2.8
1,439,416	+		GFF4513	0.89	-3.5
1,439,429	-		GFF4513	0.90	-3.0
1,439,575	+				-5.2
1,439,576	-				-6.8
1,439,578	+				-1.3
1,439,578	+				-3.1
1,439,579	-				-4.6
1,439,579	-				-4.9
1,439,697	+				+0.4
1,439,781	+		GFF4514	0.19	+0.3
1,439,781	+		GFF4514	0.19	-1.1
1,439,781	+		GFF4514	0.19	-0.3
1,439,782	-		GFF4514	0.19	-0.0
1,439,782	-		GFF4514	0.19	-0.4
1,440,193	-				+0.3
1,440,245	+				-1.1
1,440,245	+				-0.9
1,440,245	+				-0.7
1,440,245	+				-0.9
1,440,245	+				-0.5
1,440,245	+				-0.1
1,440,245	+				+0.0
1,440,245	+				+0.4
1,440,245	+				+0.3
1,440,245	+				-0.6
1,440,245	+				-1.0
1,440,246	-				-0.3
1,440,246	-				-0.3
1,440,246	-				+0.7
1,440,246	-				-0.2
1,440,246	-				+0.7
1,440,246	-				-0.3
1,440,246	-				-0.7
1,440,335	+				-0.4
1,440,335	+				+0.1
1,440,336	-				+0.1
1,440,336	-				-0.5
1,440,413	+		GFF4515	0.14	-0.1
1,440,449	+		GFF4515	0.16	-0.4
1,440,449	+		GFF4515	0.16	-0.9
1,440,449	+		GFF4515	0.16	+0.7
1,440,450	-		GFF4515	0.17	-0.1
1,440,450	-		GFF4515	0.17	-1.3
1,440,450	-		GFF4515	0.17	-0.6
1,440,450	-		GFF4515	0.17	-0.1
1,440,450	-		GFF4515	0.17	-0.0
1,440,450	-		GFF4515	0.17	-0.5
1,440,450	-		GFF4515	0.17	-1.0
1,440,450	-		GFF4515	0.17	-0.3
1,440,476	+		GFF4515	0.19	-0.4
1,440,477	-		GFF4515	0.19	-0.5
1,440,617	+		GFF4515	0.30	-0.1
1,440,617	+		GFF4515	0.30	+0.1
1,440,617	+		GFF4515	0.30	-0.8
1,440,617	+		GFF4515	0.30	-0.2
1,440,617	+		GFF4515	0.30	-0.4
1,440,618	-		GFF4515	0.30	-0.3
1,440,618	-		GFF4515	0.30	+0.6
1,440,618	-		GFF4515	0.30	-0.6
1,440,641	+		GFF4515	0.32	+0.3
1,440,642	-		GFF4515	0.32	+0.7
1,440,722	+		GFF4515	0.38	-0.3
1,440,722	+		GFF4515	0.38	-0.9
1,440,722	+		GFF4515	0.38	+0.7
1,440,722	+		GFF4515	0.38	+0.7
1,440,722	+		GFF4515	0.38	+0.6
1,440,722	+		GFF4515	0.38	-0.1
1,440,722	+		GFF4515	0.38	+0.2
1,440,722	+		GFF4515	0.38	+0.1
1,440,722	+		GFF4515	0.38	-0.9
1,440,722	+		GFF4515	0.38	-0.9
1,440,722	+		GFF4515	0.38	-0.7
1,440,722	+		GFF4515	0.38	-0.4
1,440,722	+		GFF4515	0.38	-2.1
1,440,722	+		GFF4515	0.38	-0.0
1,440,722	+		GFF4515	0.38	-0.4
1,440,722	+		GFF4515	0.38	+0.3
1,440,722	+		GFF4515	0.38	-0.4
1,440,723	-		GFF4515	0.38	-0.2
1,440,723	-		GFF4515	0.38	-0.8
1,440,723	-		GFF4515	0.38	-0.5
1,440,723	-		GFF4515	0.38	+1.3
1,440,723	-		GFF4515	0.38	-0.1
1,440,723	-		GFF4515	0.38	-0.9
1,440,723	-		GFF4515	0.38	+0.1
1,440,723	-		GFF4515	0.38	+0.3
1,440,723	-		GFF4515	0.38	+0.6
1,440,723	-		GFF4515	0.38	-0.5
1,440,723	-		GFF4515	0.38	+0.5
1,440,723	-		GFF4515	0.38	+0.4
1,440,723	-		GFF4515	0.38	+0.2
1,440,723	-		GFF4515	0.38	+0.1
1,440,890	+		GFF4515	0.51	-0.0
1,440,890	+		GFF4515	0.51	-0.3
1,440,891	-		GFF4515	0.52	-1.1
1,440,891	-		GFF4515	0.52	-0.9
1,440,950	+		GFF4515	0.56	-1.4
1,440,951	-		GFF4515	0.56	+0.4
1,440,951	-		GFF4515	0.56	+0.1
1,440,951	-		GFF4515	0.56	-1.3
1,440,981	-		GFF4515	0.59	+0.2
1,441,166	+		GFF4515	0.73	-1.3
1,441,166	+		GFF4515	0.73	-0.2
1,441,166	+		GFF4515	0.73	+0.0
1,441,166	+		GFF4515	0.73	+0.0
1,441,167	-		GFF4515	0.73	-0.2
1,441,167	-		GFF4515	0.73	-0.8
1,441,167	-		GFF4515	0.73	-1.0
1,441,293	-		GFF4515	0.83	-0.7
1,441,293	-		GFF4515	0.83	-0.3
1,441,293	-		GFF4515	0.83	-0.2
1,441,549	+				-0.1
1,441,549	+				+0.7
1,441,549	+				+0.3
1,441,550	-				-0.1
1,441,550	-				-0.1
1,441,786	+		GFF4516	0.60	+0.1
1,441,786	+		GFF4516	0.60	+0.0
1,441,786	+		GFF4516	0.60	-0.1
1,441,786	+		GFF4516	0.60	+0.5
1,441,786	+		GFF4516	0.60	+0.4
1,441,787	-		GFF4516	0.60	-0.3
1,442,279	+		GFF4517	0.16	+0.1
1,442,279	+		GFF4517	0.16	-0.4
1,442,279	+		GFF4517	0.16	-0.3
1,442,280	-		GFF4517	0.16	+1.2
1,442,336	+		GFF4517	0.19	-0.0
1,442,336	+		GFF4517	0.19	+0.3
1,442,336	+		GFF4517	0.19	-0.0
1,442,336	+		GFF4517	0.19	-0.0
1,442,336	+		GFF4517	0.19	+1.1
1,442,336	+		GFF4517	0.19	+0.4
1,442,336	+		GFF4517	0.19	+0.9
1,442,336	+		GFF4517	0.19	+0.2
1,442,337	-		GFF4517	0.19	+0.3
1,442,337	-		GFF4517	0.19	-0.1
1,442,337	-		GFF4517	0.19	-0.3
1,442,337	-		GFF4517	0.19	-0.5
1,442,337	-		GFF4517	0.19	+0.2
1,442,340	-		GFF4517	0.19	+0.3