Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4513

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,436,523	+				-0.8
1,436,523	+				+0.5
1,436,523	+				-1.6
1,436,523	+				-0.3
1,436,523	+				+0.4
1,436,524	-				+0.0
1,436,524	-				+0.1
1,436,524	-				+0.3
1,436,524	-				+0.6
1,436,524	-				+0.3
1,437,286	+				+0.1
1,437,362	+				-0.3
1,437,363	-				-0.3
1,437,363	-				-0.0
1,437,418	+				-1.2
1,437,418	+				+0.1
1,437,418	+				-0.1
1,437,418	+				-0.8
1,437,419	-				+0.4
1,437,419	-				-1.9
1,437,419	-				-1.9
1,437,419	-				+0.9
1,437,419	-				-2.1
1,437,451	+				-2.6
1,437,452	-				-3.3
1,437,742	+		GFF4513	0.14	-6.3
1,437,742	+		GFF4513	0.14	-2.9
1,437,743	-		GFF4513	0.14	-4.8
1,437,795	-		GFF4513	0.17	-3.0
1,437,805	+		GFF4513	0.17	-2.1
1,437,890	-		GFF4513	0.21	-3.2
1,437,890	-		GFF4513	0.21	-3.7
1,437,974	-		GFF4513	0.25	-0.3
1,438,330	+		GFF4513	0.40	-2.4
1,438,330	+		GFF4513	0.40	-4.7
1,438,331	-		GFF4513	0.41	-2.3
1,438,331	-		GFF4513	0.41	-3.6
1,438,331	-		GFF4513	0.41	-3.4
1,438,331	-		GFF4513	0.41	-5.3
1,438,585	+		GFF4513	0.52	-3.4
1,438,687	+		GFF4513	0.56	-3.4
1,438,945	+		GFF4513	0.68	-3.7
1,438,945	+		GFF4513	0.68	-3.7
1,438,946	-		GFF4513	0.68	-5.9
1,438,946	-		GFF4513	0.68	-0.9
1,439,011	+		GFF4513	0.71	-2.1
1,439,011	+		GFF4513	0.71	-1.6
1,439,012	-		GFF4513	0.71	-2.1
1,439,077	+		GFF4513	0.74	-1.6
1,439,078	-		GFF4513	0.74	-4.3
1,439,164	+		GFF4513	0.78	-1.9
1,439,164	+		GFF4513	0.78	-3.5
1,439,165	-		GFF4513	0.78	-0.9
1,439,165	-		GFF4513	0.78	-2.7
1,439,416	+		GFF4513	0.89	-2.8
1,439,416	+		GFF4513	0.89	-3.5
1,439,429	-		GFF4513	0.90	-3.0
1,439,575	+				-5.2
1,439,576	-				-6.8
1,439,578	+				-1.3
1,439,578	+				-3.1
1,439,579	-				-4.6
1,439,579	-				-4.9
1,439,697	+				+0.4
1,439,781	+		GFF4514	0.19	+0.3
1,439,781	+		GFF4514	0.19	-1.1
1,439,781	+		GFF4514	0.19	-0.3
1,439,782	-		GFF4514	0.19	-0.0
1,439,782	-		GFF4514	0.19	-0.4
1,440,193	-				+0.3
1,440,245	+				-1.1
1,440,245	+				-0.9
1,440,245	+				-0.7
1,440,245	+				-0.9
1,440,245	+				-0.5
1,440,245	+				-0.1
1,440,245	+				+0.0
1,440,245	+				+0.4
1,440,245	+				+0.3
1,440,245	+				-0.6
1,440,245	+				-1.0
1,440,246	-				-0.3
1,440,246	-				-0.3
1,440,246	-				+0.7
1,440,246	-				-0.2
1,440,246	-				+0.7
1,440,246	-				-0.3
1,440,246	-				-0.7
1,440,335	+				-0.4
1,440,335	+				+0.1
1,440,336	-				+0.1
1,440,336	-				-0.5
1,440,413	+		GFF4515	0.14	-0.1
1,440,449	+		GFF4515	0.16	-0.4
1,440,449	+		GFF4515	0.16	-0.9
1,440,449	+		GFF4515	0.16	+0.7
1,440,450	-		GFF4515	0.17	-0.1
1,440,450	-		GFF4515	0.17	-1.3
1,440,450	-		GFF4515	0.17	-0.6
1,440,450	-		GFF4515	0.17	-0.1
1,440,450	-		GFF4515	0.17	-0.0
1,440,450	-		GFF4515	0.17	-0.5
1,440,450	-		GFF4515	0.17	-1.0
1,440,450	-		GFF4515	0.17	-0.3
1,440,476	+		GFF4515	0.19	-0.4
1,440,477	-		GFF4515	0.19	-0.5
1,440,617	+		GFF4515	0.30	-0.1
1,440,617	+		GFF4515	0.30	+0.1
1,440,617	+		GFF4515	0.30	-0.8
1,440,617	+		GFF4515	0.30	-0.2
1,440,617	+		GFF4515	0.30	-0.4
1,440,618	-		GFF4515	0.30	-0.3
1,440,618	-		GFF4515	0.30	+0.6
1,440,618	-		GFF4515	0.30	-0.6
1,440,641	+		GFF4515	0.32	+0.3
1,440,642	-		GFF4515	0.32	+0.7