Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4407

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,336,236	+		GFF4406	0.60	-0.2
1,336,264	+		GFF4406	0.64	-0.1
1,336,264	+		GFF4406	0.64	-0.3
1,336,264	+		GFF4406	0.64	+0.1
1,336,265	-		GFF4406	0.64	+0.3
1,336,265	-		GFF4406	0.64	+0.7
1,336,265	-		GFF4406	0.64	+0.4
1,336,265	-		GFF4406	0.64	-0.0
1,336,265	-		GFF4406	0.64	+0.4
1,336,265	-		GFF4406	0.64	-0.4
1,336,266	+		GFF4406	0.64	-0.9
1,336,266	+		GFF4406	0.64	-0.5
1,336,267	-		GFF4406	0.64	-0.1
1,336,298	+		GFF4406	0.68	-0.3
1,336,389	+		GFF4406	0.79	-0.6
1,336,390	-		GFF4406	0.79	+0.2
1,336,390	-		GFF4406	0.79	-0.7
1,336,420	+		GFF4406	0.82	+0.0
1,336,420	+		GFF4406	0.82	+0.0
1,336,420	+		GFF4406	0.82	-0.2
1,336,420	+		GFF4406	0.82	+0.3
1,336,421	-		GFF4406	0.82	+0.4
1,336,421	-		GFF4406	0.82	-0.9
1,336,440	+		GFF4406	0.85	+0.1
1,336,441	-		GFF4406	0.85	-0.0
1,336,441	-		GFF4406	0.85	+0.3
1,336,544	+				+0.2
1,336,544	+				-0.0
1,336,545	-				+0.2
1,336,590	+				+0.7
1,336,704	+				+0.2
1,336,704	+				+1.3
1,336,704	+				-0.0
1,336,704	+				+0.6
1,336,704	+				-0.1
1,336,704	+				+0.4
1,336,704	+				+0.3
1,336,704	+				-1.7
1,336,704	+				+0.2
1,336,704	+				+0.1
1,336,704	+				+1.0
1,336,704	+				-0.2
1,336,704	+				+0.1
1,336,704	+				+0.9
1,336,704	+				+0.3
1,336,704	+				-0.0
1,336,704	+				-1.0
1,336,704	+				-0.4
1,336,704	+				-0.7
1,336,704	+				-0.2
1,336,704	+				-0.6
1,336,704	+				-0.2
1,336,704	+				-0.9
1,336,704	+				-0.3
1,336,704	+				-0.8
1,336,704	+				-0.4
1,336,704	+				-0.9
1,336,705	-				+0.3
1,336,705	-				-0.4
1,336,705	-				+0.1
1,336,705	-				-0.5
1,336,705	-				+0.3
1,336,705	-				-0.2
1,336,705	-				-0.0
1,336,705	-				+0.2
1,336,705	-				-0.3
1,336,705	-				-0.2
1,336,705	-				-0.6
1,336,705	-				+0.2
1,336,705	-				+0.2
1,336,705	-				+0.6
1,336,705	-				-1.4
1,336,705	-				+1.5
1,336,705	-				+0.5
1,336,705	-				-0.3
1,336,705	-				-0.0
1,336,705	-				-0.3
1,336,705	-				+0.6
1,336,705	-				+0.6
1,336,711	+				+0.2
1,336,711	+				+0.1
1,336,711	+				+0.1
1,336,711	+				+0.2
1,336,711	+				+0.7
1,336,711	+				+0.0
1,336,711	+				+0.3
1,336,711	+				+0.1
1,336,711	+				-2.1
1,336,711	+				+0.6
1,336,711	+				-0.1
1,336,711	+				+0.0
1,336,711	+				-0.3
1,336,711	+				+0.7
1,336,711	+				-0.0
1,336,711	+				-0.6
1,336,711	+				-0.1
1,336,711	+				+0.2
1,336,711	+				-0.1
1,336,711	+				-0.7
1,336,711	+				+0.0
1,336,711	+				-0.1
1,336,711	+				-0.1
1,336,711	+				-0.2
1,336,712	-				-0.0
1,336,712	-				-0.6
1,336,712	-				-0.7
1,336,712	-				+0.0
1,336,712	-				+0.4
1,336,712	-				-0.3
1,336,712	-				+1.7
1,336,712	-				-0.2
1,336,712	-				-0.2
1,336,712	-				-0.5
1,336,712	-				-0.5
1,336,712	-				-0.0
1,336,712	-				+0.3
1,336,712	-				+0.6
1,336,712	-				-0.2
1,336,712	-				-0.2
1,336,712	-				-0.4
1,336,712	-				-0.2
1,336,712	-				+0.8
1,336,802	+				+0.1
1,336,804	+				+0.1
1,336,804	+				+1.3
1,336,804	+				+0.1
1,336,804	+				+0.1
1,336,804	+				-0.4
1,336,804	+				+0.4
1,336,804	+				+1.3
1,336,804	+				+0.9
1,336,804	+				-0.6
1,336,804	+				-0.3
1,336,804	+				+0.9
1,336,804	+				+0.6
1,336,804	+				+1.6
1,336,804	+				-0.4
1,336,804	+				+0.1
1,336,804	+				+0.2
1,336,804	+				+0.3
1,336,804	+				-1.3
1,336,804	+				+0.7
1,336,804	+				-0.3
1,336,804	+				-0.3
1,336,804	+				-0.6
1,336,804	+				+0.7
1,336,804	+				-0.1
1,336,804	+				+0.9
1,336,804	+				-0.3
1,336,804	+				+0.4
1,336,804	+				-0.9
1,336,804	+				+0.4
1,336,804	+				-0.0
1,336,804	+				+1.2
1,336,804	+				+0.1
1,336,804	+				-0.2
1,336,804	+				-0.3
1,336,805	-				-0.6
1,336,805	-				+0.3
1,336,805	-				-1.1
1,336,805	-				-0.4
1,336,805	-				+0.1
1,336,805	-				-0.7
1,336,805	-				+0.7
1,336,805	-				-0.7
1,336,805	-				+0.9
1,336,805	-				-0.6
1,336,805	-				-0.2
1,336,805	-				+0.6
1,336,805	-				-0.2
1,336,805	-				+0.5
1,336,805	-				-0.5
1,336,805	-				+0.3
1,336,805	-				-0.6
1,336,805	-				+1.0
1,336,805	-				-0.2
1,336,805	-				+0.0
1,336,805	-				-0.3
1,336,805	-				+0.2
1,336,805	-				-1.3
1,336,805	-				+0.4
1,336,805	-				+0.6
1,336,805	-				+1.3
1,336,805	-				+0.1
1,336,805	-				-0.2
1,336,805	-				-0.8
1,336,835	+				+0.6
1,336,835	+				-0.2
1,336,835	+				-0.3
1,336,836	-				-0.1
1,336,836	-				-1.3
1,336,836	-				+0.5
1,336,836	-				+0.1
1,336,836	-				-0.2
1,336,836	-				+1.5
1,336,839	-				+0.1
1,336,908	+				+0.7
1,336,908	+				+0.1
1,336,908	+				+2.5
1,336,908	+				+0.6
1,336,908	+				+1.3
1,336,908	+				+0.4
1,336,909	-				-0.3
1,336,909	-				+0.0
1,336,935	+				-0.7
1,336,935	+				+0.4
1,336,935	+				+1.1
1,336,935	+				-0.4
1,336,935	+				+1.1
1,336,935	+				+0.3
1,336,935	+				-0.0
1,336,936	-				-0.5
1,336,936	-				+0.2
1,336,936	-				-0.4
1,336,936	-				+0.0
1,336,936	-				+0.1
1,336,998	+				+0.2
1,336,998	+				+0.1
1,336,998	+				+1.7
1,336,999	-				-0.2
1,336,999	-				+2.0
1,336,999	-				+0.4
1,337,071	+				-0.4
1,337,071	+				-0.2
1,337,071	+				+0.1
1,337,071	+				+0.1
1,337,071	+				-0.6
1,337,071	+				-0.6
1,337,072	-				+0.4
1,337,072	-				-0.4
1,337,072	-				+0.0
1,337,072	-				-2.3
1,337,117	-				-0.7
1,337,225	+				-0.7
1,337,270	-		GFF4407	0.11	+0.4
1,337,270	-		GFF4407	0.11	+0.7
1,337,350	+		GFF4407	0.20	-0.1
1,337,398	+		GFF4407	0.26	+0.5
1,337,398	+		GFF4407	0.26	-0.4
1,337,398	+		GFF4407	0.26	+0.3
1,337,398	+		GFF4407	0.26	-0.1
1,337,398	+		GFF4407	0.26	+0.7
1,337,398	+		GFF4407	0.26	+2.0
1,337,398	+		GFF4407	0.26	+0.5
1,337,399	-		GFF4407	0.26	-0.7
1,337,399	-		GFF4407	0.26	+0.3
1,337,399	-		GFF4407	0.26	+0.2
1,337,399	-		GFF4407	0.26	+0.0
1,337,595	+		GFF4407	0.48	-0.7
1,337,595	+		GFF4407	0.48	+1.0
1,337,595	+		GFF4407	0.48	-0.2
1,337,596	-		GFF4407	0.48	+0.5
1,337,596	-		GFF4407	0.48	+0.4
1,337,596	-		GFF4407	0.48	+0.1
1,337,596	-		GFF4407	0.48	+0.2
1,337,699	-		GFF4407	0.59	-0.3
1,337,710	+		GFF4407	0.61	-0.1
1,337,711	-		GFF4407	0.61	+0.3
1,337,854	+		GFF4407	0.77	-0.1
1,337,854	+		GFF4407	0.77	-0.6
1,337,854	+		GFF4407	0.77	-0.1
1,337,855	-		GFF4407	0.77	-0.4
1,337,855	-		GFF4407	0.77	-0.0
1,337,855	-		GFF4407	0.77	+0.2
1,337,855	-		GFF4407	0.77	+0.2
1,337,949	+		GFF4407	0.87	-0.2
1,337,950	-		GFF4407	0.87	-0.5
1,337,950	-		GFF4407	0.87	-0.6
1,338,095	+				-0.1
1,338,095	+				-0.7
1,338,095	+				-1.3
1,338,096	-				+0.5
1,338,096	-				+0.1
1,338,096	-				+0.7
1,338,098	-				+0.1
1,338,107	+				-0.1
1,338,107	+				+0.0
1,338,107	+				+1.1
1,338,107	+				-0.5
1,338,107	+				+0.4
1,338,107	+				-1.0
1,338,107	+				+0.1
1,338,108	-				-0.7
1,338,108	-				+0.9
1,338,108	-				+0.1
1,338,108	-				+0.1
1,338,140	+				-0.2
1,338,435	+		GFF4408	0.22	+0.2
1,338,675	+		GFF4408	0.42	-0.2
1,338,675	+		GFF4408	0.42	-0.3
1,338,753	+		GFF4408	0.48	-0.0
1,338,754	-		GFF4408	0.48	+1.7
1,338,864	+		GFF4408	0.58	-0.3
1,338,864	+		GFF4408	0.58	-0.4
1,338,865	-		GFF4408	0.58	-0.4
1,338,865	-		GFF4408	0.58	-0.2
1,338,865	-		GFF4408	0.58	-1.2
1,338,865	-		GFF4408	0.58	-0.3
1,338,935	+		GFF4408	0.63	-0.2
1,338,936	-		GFF4408	0.63	+0.3
1,338,936	-		GFF4408	0.63	+0.5
1,339,002	-		GFF4408	0.69	-0.7