Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4405

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,333,917	+		GFF4404	0.22	+0.5
1,333,966	-		GFF4404	0.26	-0.2
1,333,981	-		GFF4404	0.27	-0.4
1,334,028	+		GFF4404	0.31	+1.0
1,334,028	+		GFF4404	0.31	+0.4
1,334,045	+		GFF4404	0.33	+0.3
1,334,134	+		GFF4404	0.40	+0.0
1,334,135	-		GFF4404	0.40	-0.4
1,334,135	-		GFF4404	0.40	-0.7
1,334,135	-		GFF4404	0.40	-0.2
1,334,135	-		GFF4404	0.40	+0.5
1,334,135	-		GFF4404	0.40	-0.4
1,334,135	-		GFF4404	0.40	+0.5
1,334,347	+		GFF4404	0.58	+0.4
1,334,367	+		GFF4404	0.60	+1.0
1,334,387	+		GFF4404	0.62	+0.7
1,334,388	-		GFF4404	0.62	+0.0
1,334,388	-		GFF4404	0.62	-2.3
1,334,389	+		GFF4404	0.62	-0.4
1,334,389	+		GFF4404	0.62	-1.0
1,334,389	+		GFF4404	0.62	-1.0
1,334,390	-		GFF4404	0.62	-0.1
1,334,390	-		GFF4404	0.62	-0.1
1,334,458	+		GFF4404	0.68	-0.0
1,334,459	-		GFF4404	0.68	+0.5
1,334,459	-		GFF4404	0.68	-0.1
1,334,459	-		GFF4404	0.68	-0.1
1,334,475	+		GFF4404	0.69	+0.9
1,334,475	+		GFF4404	0.69	+0.6
1,334,475	+		GFF4404	0.69	-0.8
1,334,475	+		GFF4404	0.69	-1.6
1,334,475	+		GFF4404	0.69	-0.3
1,334,475	+		GFF4404	0.69	+0.2
1,334,475	+		GFF4404	0.69	-0.6
1,334,475	+		GFF4404	0.69	+0.3
1,334,475	+		GFF4404	0.69	+0.6
1,334,475	+		GFF4404	0.69	-0.9
1,334,476	-		GFF4404	0.69	-0.3
1,334,476	-		GFF4404	0.69	-0.2
1,334,476	-		GFF4404	0.69	+1.0
1,334,476	-		GFF4404	0.69	-0.8
1,334,476	-		GFF4404	0.69	+0.2
1,334,476	-		GFF4404	0.69	-0.2
1,334,476	-		GFF4404	0.69	+1.3
1,334,476	-		GFF4404	0.69	-0.0
1,334,476	-		GFF4404	0.69	+0.3
1,334,566	+		GFF4404	0.77	-0.3
1,334,566	+		GFF4404	0.77	-0.6
1,334,567	-		GFF4404	0.77	-0.0
1,334,567	-		GFF4404	0.77	+0.3
1,334,567	-		GFF4404	0.77	+0.3
1,334,627	+		GFF4404	0.82	-0.2
1,334,627	+		GFF4404	0.82	+0.4
1,334,627	+		GFF4404	0.82	-0.8
1,334,669	-		GFF4404	0.85	-0.5
1,334,669	-		GFF4404	0.85	+0.1
1,334,669	-		GFF4404	0.85	-0.2
1,334,826	-				-0.5
1,334,827	+				-1.8
1,334,846	-				+1.1
1,335,033	+		GFF4405	0.18	+0.7
1,335,033	+		GFF4405	0.18	+1.3
1,335,033	+		GFF4405	0.18	-0.5
1,335,033	+		GFF4405	0.18	-0.5
1,335,033	+		GFF4405	0.18	-0.1
1,335,033	+		GFF4405	0.18	+0.1
1,335,033	+		GFF4405	0.18	-0.4
1,335,033	+		GFF4405	0.18	-0.8
1,335,033	+		GFF4405	0.18	-0.3
1,335,033	+		GFF4405	0.18	-0.0
1,335,033	+		GFF4405	0.18	+0.6
1,335,033	+		GFF4405	0.18	-0.5
1,335,034	-		GFF4405	0.18	+0.0
1,335,034	-		GFF4405	0.18	-0.2
1,335,034	-		GFF4405	0.18	+0.7
1,335,034	-		GFF4405	0.18	-0.6
1,335,034	-		GFF4405	0.18	+0.4
1,335,034	-		GFF4405	0.18	-0.1
1,335,034	-		GFF4405	0.18	+0.4
1,335,034	-		GFF4405	0.18	-0.7
1,335,034	-		GFF4405	0.18	+0.5
1,335,034	-		GFF4405	0.18	-0.4
1,335,034	-		GFF4405	0.18	+0.7
1,335,034	-		GFF4405	0.18	+0.0
1,335,055	+		GFF4405	0.21	+0.9
1,335,055	+		GFF4405	0.21	+1.2
1,335,055	+		GFF4405	0.21	-0.1
1,335,055	+		GFF4405	0.21	+0.0
1,335,055	+		GFF4405	0.21	+0.1
1,335,055	+		GFF4405	0.21	+0.2
1,335,055	+		GFF4405	0.21	+0.7
1,335,055	+		GFF4405	0.21	-0.0
1,335,055	+		GFF4405	0.21	-0.4
1,335,055	+		GFF4405	0.21	+0.4
1,335,055	+		GFF4405	0.21	+0.2
1,335,055	+		GFF4405	0.21	-0.4
1,335,056	-		GFF4405	0.21	+1.3
1,335,056	-		GFF4405	0.21	-0.5
1,335,056	-		GFF4405	0.21	-0.5
1,335,056	-		GFF4405	0.21	+0.1
1,335,056	-		GFF4405	0.21	-0.7
1,335,056	-		GFF4405	0.21	-0.1
1,335,056	-		GFF4405	0.21	+1.3
1,335,056	-		GFF4405	0.21	-0.4
1,335,056	-		GFF4405	0.21	-0.9
1,335,214	+		GFF4405	0.42	+0.5
1,335,215	-		GFF4405	0.42	-0.4
1,335,215	-		GFF4405	0.42	+0.0
1,335,302	+		GFF4405	0.54	+0.0
1,335,303	-		GFF4405	0.54	+0.6
1,335,303	-		GFF4405	0.54	+1.2
1,335,344	-		GFF4405	0.60	-0.7
1,335,454	+		GFF4405	0.75	-0.1
1,335,454	+		GFF4405	0.75	+0.4
1,335,455	-		GFF4405	0.75	-1.6
1,335,455	-		GFF4405	0.75	-0.1
1,335,557	+		GFF4405	0.88	+0.0
1,335,557	+		GFF4405	0.88	-0.1
1,335,557	+		GFF4405	0.88	+0.2
1,335,558	-		GFF4405	0.89	-0.1
1,335,558	-		GFF4405	0.89	-0.2
1,335,857	+		GFF4406	0.15	-0.1
1,335,928	+		GFF4406	0.24	+0.2
1,335,964	-		GFF4406	0.28	+0.7
1,336,149	+		GFF4406	0.50	+0.3
1,336,149	+		GFF4406	0.50	-0.3
1,336,149	+		GFF4406	0.50	+0.2
1,336,149	+		GFF4406	0.50	+0.2
1,336,149	+		GFF4406	0.50	+0.0
1,336,149	+		GFF4406	0.50	+0.7
1,336,149	+		GFF4406	0.50	-0.1
1,336,150	-		GFF4406	0.50	-0.2
1,336,150	-		GFF4406	0.50	-2.4
1,336,150	-		GFF4406	0.50	-1.3
1,336,150	-		GFF4406	0.50	+0.2
1,336,150	-		GFF4406	0.50	+0.0
1,336,150	-		GFF4406	0.50	-0.1
1,336,236	+		GFF4406	0.60	-0.2
1,336,264	+		GFF4406	0.64	-0.1
1,336,264	+		GFF4406	0.64	-0.3
1,336,264	+		GFF4406	0.64	+0.1
1,336,265	-		GFF4406	0.64	+0.3
1,336,265	-		GFF4406	0.64	+0.7
1,336,265	-		GFF4406	0.64	+0.4
1,336,265	-		GFF4406	0.64	-0.0
1,336,265	-		GFF4406	0.64	+0.4
1,336,265	-		GFF4406	0.64	-0.4
1,336,266	+		GFF4406	0.64	-0.9
1,336,266	+		GFF4406	0.64	-0.5
1,336,267	-		GFF4406	0.64	-0.1
1,336,298	+		GFF4406	0.68	-0.3
1,336,389	+		GFF4406	0.79	-0.6
1,336,390	-		GFF4406	0.79	+0.2
1,336,390	-		GFF4406	0.79	-0.7
1,336,420	+		GFF4406	0.82	+0.0
1,336,420	+		GFF4406	0.82	+0.0
1,336,420	+		GFF4406	0.82	-0.2
1,336,420	+		GFF4406	0.82	+0.3
1,336,421	-		GFF4406	0.82	+0.4
1,336,421	-		GFF4406	0.82	-0.9
1,336,440	+		GFF4406	0.85	+0.1
1,336,441	-		GFF4406	0.85	-0.0
1,336,441	-		GFF4406	0.85	+0.3
1,336,544	+				+0.2
1,336,544	+				-0.0
1,336,545	-				+0.2
1,336,590	+				+0.7