Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4330

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,257,693	+		GFF4328	0.62	-0.0
1,257,693	+		GFF4328	0.62	-0.3
1,257,768	+		GFF4328	0.70	-0.1
1,257,768	+		GFF4328	0.70	-0.7
1,257,768	+		GFF4328	0.70	-0.1
1,257,768	+		GFF4328	0.70	+0.1
1,257,768	+		GFF4328	0.70	+0.2
1,257,768	+		GFF4328	0.70	+0.7
1,257,768	+		GFF4328	0.70	-0.1
1,257,768	+		GFF4328	0.70	-0.0
1,257,769	-		GFF4328	0.70	-0.5
1,257,769	-		GFF4328	0.70	+0.2
1,257,769	-		GFF4328	0.70	+0.2
1,257,918	+		GFF4328	0.86	+0.1
1,257,918	+		GFF4328	0.86	-0.1
1,257,918	+		GFF4328	0.86	-0.4
1,257,919	-		GFF4328	0.86	+0.7
1,257,919	-		GFF4328	0.86	-0.4
1,257,969	+				-0.5
1,257,969	+				-0.8
1,257,969	+				-0.2
1,257,969	-				-0.0
1,258,104	-				-0.3
1,258,217	+				-0.7
1,258,217	+				+0.5
1,258,217	+				-0.3
1,258,218	-				+0.5
1,258,237	+				+0.3
1,258,306	+		GFF4329	0.18	+0.2
1,258,306	+		GFF4329	0.18	-0.4
1,258,306	+		GFF4329	0.18	+0.3
1,258,306	+		GFF4329	0.18	-0.7
1,258,306	+		GFF4329	0.18	+0.0
1,258,307	-		GFF4329	0.18	+0.4
1,258,307	-		GFF4329	0.18	+0.4
1,258,307	-		GFF4329	0.18	+0.5
1,258,307	-		GFF4329	0.18	+0.4
1,258,307	-		GFF4329	0.18	-0.5
1,258,561	+		GFF4329	0.82	-0.2
1,258,561	+		GFF4329	0.82	+0.1
1,258,561	+		GFF4329	0.82	+0.2
1,258,583	-		GFF4329	0.88	-0.6
1,258,779	+		GFF4330	0.13	+0.4
1,259,271	+		GFF4330	0.66	+0.0
1,259,271	+		GFF4330	0.66	-0.5
1,259,271	+		GFF4330	0.66	-0.3
1,259,271	+		GFF4330	0.66	+0.2
1,259,272	-		GFF4330	0.67	+1.0
1,259,272	-		GFF4330	0.67	+0.0
1,259,272	-		GFF4330	0.67	+0.0
1,259,272	-		GFF4330	0.67	+0.7
1,259,272	-		GFF4330	0.67	-0.6
1,259,315	+		GFF4330	0.71	+1.3
1,259,319	+		GFF4330	0.72	-0.1
1,259,319	+		GFF4330	0.72	-0.1
1,259,319	+		GFF4330	0.72	+1.7
1,259,320	-		GFF4330	0.72	+0.1
1,259,320	-		GFF4330	0.72	-0.9
1,259,320	-		GFF4330	0.72	-1.0
1,259,412	+		GFF4330	0.82	-0.3
1,259,412	+		GFF4330	0.82	+0.8
1,259,412	+		GFF4330	0.82	+1.8
1,259,412	+		GFF4330	0.82	-0.0
1,259,413	-		GFF4330	0.82	-0.1
1,259,473	-		GFF4330	0.88	+0.4
1,259,473	-		GFF4330	0.88	+0.6
1,259,473	-		GFF4330	0.88	+0.3
1,259,619	+				-0.7
1,259,689	-		GFF4331	0.12	+0.4
1,259,748	+		GFF4331	0.26	-0.8
1,259,749	-		GFF4331	0.26	-0.7
1,259,871	+		GFF4331	0.54	+1.0
1,259,871	+		GFF4331	0.54	+0.3
1,259,871	+		GFF4331	0.54	-0.5
1,259,871	+		GFF4331	0.54	-0.2
1,259,871	+		GFF4331	0.54	+0.2
1,259,871	+		GFF4331	0.54	-0.4
1,259,871	+		GFF4331	0.54	-0.1
1,259,872	-		GFF4331	0.55	-0.2
1,259,991	+		GFF4331	0.83	+0.0
1,259,992	-		GFF4331	0.83	-0.1
1,260,068	+				-0.6
1,260,068	+				+0.1
1,260,068	+				-1.2
1,260,068	+				+1.5
1,260,068	+				+0.3
1,260,068	+				-0.7
1,260,069	-				-0.3
1,260,069	-				+0.8
1,260,069	-				-0.6
1,260,069	-				+0.2
1,260,413	-				-1.1
1,260,577	+		GFF4333	0.13	+0.1
1,260,577	+		GFF4333	0.13	-2.4
1,260,577	+		GFF4333	0.13	-2.0
1,260,577	+		GFF4333	0.13	+0.1
1,260,577	+		GFF4333	0.13	-1.7
1,260,578	-		GFF4333	0.13	-0.7
1,260,578	-		GFF4333	0.13	-1.2
1,260,578	-		GFF4333	0.13	-1.4
1,260,578	-		GFF4333	0.13	-0.9