Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4300

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,224,164	+		GFF4299	0.16	-1.0
1,224,164	+		GFF4299	0.16	-0.8
1,224,164	+		GFF4299	0.16	-1.4
1,224,164	+		GFF4299	0.16	+0.7
1,224,165	-		GFF4299	0.16	-0.7
1,224,165	-		GFF4299	0.16	-0.9
1,224,218	+		GFF4299	0.27	-0.5
1,224,218	+		GFF4299	0.27	-0.7
1,224,218	+		GFF4299	0.27	-1.8
1,224,218	+		GFF4299	0.27	-1.2
1,224,218	+		GFF4299	0.27	-1.5
1,224,218	+		GFF4299	0.27	-1.3
1,224,219	-		GFF4299	0.27	-0.3
1,224,284	+		GFF4299	0.40	-0.9
1,224,285	-		GFF4299	0.40	-0.8
1,224,285	-		GFF4299	0.40	-0.5
1,224,285	-		GFF4299	0.40	-1.5
1,224,651	+				-3.3
1,224,651	+				-4.8
1,224,652	-				-2.9
1,224,652	-				-3.9
1,224,652	-				-3.1
1,224,652	-				-3.4
1,224,652	-				-2.3
1,224,873	+		GFF4300	0.20	-4.0
1,224,874	-		GFF4300	0.20	-1.5
1,224,879	+		GFF4300	0.20	-1.9
1,224,880	-		GFF4300	0.21	-2.3
1,224,880	-		GFF4300	0.21	-2.3
1,224,927	+		GFF4300	0.24	-3.6
1,224,927	+		GFF4300	0.24	-3.6
1,224,927	+		GFF4300	0.24	-0.9
1,224,928	-		GFF4300	0.24	-5.8
1,224,928	-		GFF4300	0.24	-3.5
1,225,095	+		GFF4300	0.37	-2.1
1,225,095	+		GFF4300	0.37	-1.3
1,225,096	-		GFF4300	0.37	-3.8
1,225,096	-		GFF4300	0.37	-0.9
1,225,096	-		GFF4300	0.37	-2.5
1,225,096	-		GFF4300	0.37	-1.3
1,225,096	-		GFF4300	0.37	-1.3
1,225,096	-		GFF4300	0.37	-2.7
1,225,096	-		GFF4300	0.37	-3.2
1,225,188	+		GFF4300	0.43	-3.5
1,225,188	+		GFF4300	0.43	-3.1
1,225,188	+		GFF4300	0.43	-1.3
1,225,188	+		GFF4300	0.43	-0.9
1,225,189	-		GFF4300	0.44	-2.9
1,225,701	+		GFF4300	0.82	-3.5
1,225,701	+		GFF4300	0.82	-4.0
1,225,701	+		GFF4300	0.82	-4.7
1,225,702	-		GFF4300	0.82	-2.1
1,225,739	+		GFF4300	0.85	-3.5
1,225,739	+		GFF4300	0.85	-2.9
1,225,891	-				-1.3
1,226,320	+				-0.9
1,226,320	+				-0.8
1,226,320	+				-0.5
1,226,321	-				-0.8
1,226,321	-				-0.4
1,226,321	-				-0.2
1,226,425	+		GFF4301	0.10	-0.3
1,226,425	+		GFF4301	0.10	-1.6
1,226,488	+		GFF4301	0.12	+0.1
1,226,489	-		GFF4301	0.12	-0.6
1,226,573	-		GFF4301	0.14	+1.0
1,226,671	+		GFF4301	0.17	-2.1
1,226,672	-		GFF4301	0.17	+0.3
1,226,672	-		GFF4301	0.17	+0.2