Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4264

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,189,411	+		GFF4263	0.53	+0.2
1,189,411	+		GFF4263	0.53	-0.0
1,189,465	+		GFF4263	0.62	+0.9
1,189,511	-		GFF4263	0.69	+0.1
1,189,714	+				+0.4
1,189,726	+				-1.1
1,189,726	+				-0.7
1,189,726	+				-0.7
1,189,726	+				+2.3
1,189,726	+				-0.0
1,189,726	+				-0.3
1,189,727	+				-0.1
1,189,727	-				+0.2
1,189,727	-				-0.8
1,189,727	-				-1.2
1,189,727	-				-0.3
1,189,727	-				+0.4
1,189,727	-				-1.4
1,189,748	+				-1.3
1,189,748	+				-0.4
1,189,749	-				-0.4
1,189,749	-				-0.9
1,189,749	-				-1.0
1,189,749	-				-0.3
1,189,749	-				+0.6
1,189,771	-				-0.5
1,189,792	+				-0.3
1,189,793	-				-0.5
1,189,909	+		GFF4264	0.18	-0.7
1,189,909	+		GFF4264	0.18	-1.3
1,189,909	+		GFF4264	0.18	+0.7
1,189,909	+		GFF4264	0.18	-1.5
1,189,909	+		GFF4264	0.18	-0.8
1,189,909	+		GFF4264	0.18	-0.9
1,189,910	-		GFF4264	0.18	+0.1
1,189,910	-		GFF4264	0.18	-0.3
1,189,910	-		GFF4264	0.18	+1.2
1,189,910	-		GFF4264	0.18	-0.4
1,189,910	-		GFF4264	0.18	+0.3
1,189,910	-		GFF4264	0.18	+0.2
1,190,008	+		GFF4264	0.26	-0.5
1,190,008	+		GFF4264	0.26	-1.0
1,190,008	+		GFF4264	0.26	+0.9
1,190,009	-		GFF4264	0.27	-1.1
1,190,009	-		GFF4264	0.27	-0.6
1,190,009	-		GFF4264	0.27	-1.2
1,190,009	-		GFF4264	0.27	-0.3
1,190,149	+		GFF4264	0.39	-1.6
1,190,149	+		GFF4264	0.39	+0.4
1,190,149	+		GFF4264	0.39	-0.4
1,190,149	+		GFF4264	0.39	+1.1
1,190,150	-		GFF4264	0.39	-1.4
1,190,150	-		GFF4264	0.39	-0.8
1,190,150	-		GFF4264	0.39	-0.3
1,190,150	-		GFF4264	0.39	-0.8
1,190,150	-		GFF4264	0.39	-0.7
1,190,623	+		GFF4264	0.82	-1.3
1,190,623	+		GFF4264	0.82	-1.1
1,190,623	+		GFF4264	0.82	-1.1
1,190,624	-		GFF4264	0.82	-0.8
1,190,624	-		GFF4264	0.82	-0.4
1,190,624	-		GFF4264	0.82	-1.4
1,190,629	+		GFF4264	0.82	+0.1
1,190,629	+		GFF4264	0.82	+0.2
1,190,630	-		GFF4264	0.82	+0.1
1,190,630	-		GFF4264	0.82	-1.0
1,190,662	+		GFF4264	0.85	-0.1
1,190,662	+		GFF4264	0.85	-0.5
1,190,662	+		GFF4264	0.85	-1.4
1,190,662	+		GFF4264	0.85	-0.4
1,190,662	+		GFF4264	0.85	-0.8
1,190,662	+		GFF4264	0.85	-1.5
1,190,662	+		GFF4264	0.85	-0.8
1,190,663	-		GFF4264	0.85	-0.0
1,190,663	-		GFF4264	0.85	-1.5
1,190,663	-		GFF4264	0.85	-1.1
1,190,663	-		GFF4264	0.85	-0.6
1,190,663	-		GFF4264	0.85	-0.5
1,190,837	+				-0.1
1,190,837	+				+0.3
1,190,837	+				-0.3
1,190,838	-				+0.1
1,190,950	+				-0.1
1,190,950	+				-0.1
1,190,951	-				-0.3
1,190,951	-				+0.3
1,191,028	+		GFF4265	0.13	+0.1
1,191,029	-		GFF4265	0.13	+0.0
1,191,029	-		GFF4265	0.13	-1.9
1,191,235	+		GFF4265	0.38	-0.9
1,191,235	+		GFF4265	0.38	-0.2
1,191,235	+		GFF4265	0.38	+0.3
1,191,790	-				-0.8