Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4235

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,147,497	+		GFF4233	0.71	-0.5
1,147,497	+		GFF4233	0.71	-0.8
1,147,497	+		GFF4233	0.71	+0.7
1,147,497	+		GFF4233	0.71	-0.2
1,147,498	-		GFF4233	0.71	+0.6
1,147,564	+		GFF4233	0.79	-1.1
1,147,564	+		GFF4233	0.79	+0.7
1,147,565	-		GFF4233	0.79	+0.6
1,147,618	+		GFF4233	0.86	-0.3
1,147,618	+		GFF4233	0.86	-1.8
1,147,618	+		GFF4233	0.86	+0.2
1,147,619	-		GFF4233	0.86	+0.1
1,147,619	-		GFF4233	0.86	-0.5
1,147,619	-		GFF4233	0.86	+0.2
1,147,627	+		GFF4233	0.87	-2.6
1,147,627	+		GFF4233	0.87	-1.3
1,147,627	+		GFF4233	0.87	-1.3
1,147,628	-		GFF4233	0.87	-0.3
1,147,628	-		GFF4233	0.87	-1.3
1,147,633	+		GFF4233	0.88	-2.1
1,147,634	-		GFF4233	0.88	+0.3
1,147,634	-		GFF4233	0.88	-0.6
1,147,634	-		GFF4233	0.88	+0.4
1,147,634	-		GFF4233	0.88	+1.2
1,147,634	-		GFF4233	0.88	+0.5
1,147,634	-		GFF4233	0.88	-0.2
1,147,634	-		GFF4233	0.88	-1.6
1,147,634	-		GFF4233	0.88	+0.9
1,147,675	+				-2.3
1,147,708	+				+0.7
1,147,708	+				+0.2
1,147,709	-				-0.8
1,147,709	-				+1.3
1,147,709	-				+0.6
1,147,709	-				-0.8
1,147,709	-				+0.3
1,147,709	-				+0.2
1,147,709	-				-1.8
1,147,874	-		GFF4234	0.16	-0.0
1,148,260	+		GFF4234	0.71	-0.4
1,148,260	+		GFF4234	0.71	+0.4
1,148,260	+		GFF4234	0.71	+0.0
1,148,260	+		GFF4234	0.71	+0.2
1,148,261	-		GFF4234	0.71	-0.3
1,148,261	-		GFF4234	0.71	+0.5
1,148,290	+		GFF4234	0.75	-0.3
1,148,290	+		GFF4234	0.75	-0.0
1,148,290	+		GFF4234	0.75	+0.3
1,148,290	+		GFF4234	0.75	+0.9
1,148,290	+		GFF4234	0.75	+0.6
1,148,291	-		GFF4234	0.75	-0.3
1,148,291	-		GFF4234	0.75	+0.6
1,148,291	-		GFF4234	0.75	-0.4
1,148,291	-		GFF4234	0.75	-0.0
1,148,291	-		GFF4234	0.75	+0.0
1,148,291	-		GFF4234	0.75	+0.3
1,148,772	+		GFF4235	0.42	+0.6
1,148,772	+		GFF4235	0.42	+1.2
1,148,773	-		GFF4235	0.42	+0.4
1,148,773	-		GFF4235	0.42	-1.6
1,148,898	+		GFF4235	0.59	+0.1
1,148,898	+		GFF4235	0.59	+0.4
1,148,898	+		GFF4235	0.59	-1.5
1,148,899	-		GFF4235	0.60	-0.1
1,148,899	-		GFF4235	0.60	+1.2
1,148,961	+		GFF4235	0.68	+1.3
1,148,961	+		GFF4235	0.68	+0.2
1,148,961	+		GFF4235	0.68	+0.1
1,148,961	+		GFF4235	0.68	-0.2
1,148,961	+		GFF4235	0.68	-0.6
1,148,999	+		GFF4235	0.73	+0.1
1,148,999	+		GFF4235	0.73	-0.1
1,149,047	+		GFF4235	0.80	-0.1
1,149,048	-		GFF4235	0.80	+0.4
1,149,605	+		GFF4236	0.31	+0.4
1,149,605	+		GFF4236	0.31	-0.3
1,149,605	+		GFF4236	0.31	-1.3
1,149,605	+		GFF4236	0.31	+0.7
1,149,605	+		GFF4236	0.31	+0.7
1,149,606	-		GFF4236	0.31	+0.9
1,149,606	-		GFF4236	0.31	+0.1
1,149,606	-		GFF4236	0.31	+0.1
1,149,606	-		GFF4236	0.31	+0.5
1,149,606	-		GFF4236	0.31	+0.9
1,149,606	-		GFF4236	0.31	-0.0
1,149,606	-		GFF4236	0.31	+1.2
1,149,606	-		GFF4236	0.31	+0.3
1,149,606	-		GFF4236	0.31	+0.4
1,149,644	+		GFF4236	0.34	-0.7
1,149,644	+		GFF4236	0.34	+0.2
1,149,644	+		GFF4236	0.34	+0.1
1,149,644	+		GFF4236	0.34	+0.5
1,149,644	+		GFF4236	0.34	-0.2
1,149,644	+		GFF4236	0.34	+0.4
1,149,644	+		GFF4236	0.34	-2.4
1,149,644	+		GFF4236	0.34	-1.7
1,149,644	+		GFF4236	0.34	+1.2
1,149,645	-		GFF4236	0.34	+0.8
1,149,645	-		GFF4236	0.34	+0.9
1,149,645	-		GFF4236	0.34	+0.8
1,149,645	-		GFF4236	0.34	+0.3
1,149,646	+		GFF4236	0.34	+0.2
1,149,646	+		GFF4236	0.34	-0.3
1,149,646	+		GFF4236	0.34	+0.4
1,149,646	+		GFF4236	0.34	+0.4
1,149,646	+		GFF4236	0.34	+0.1
1,149,646	+		GFF4236	0.34	+0.6
1,149,646	+		GFF4236	0.34	-1.4
1,149,647	-		GFF4236	0.35	+0.7
1,149,741	-		GFF4236	0.42	+0.7
1,149,920	+		GFF4236	0.55	+0.4
1,149,920	+		GFF4236	0.55	-0.0
1,149,920	+		GFF4236	0.55	+1.3
1,149,921	-		GFF4236	0.55	+0.5