Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF417 and GFF418 are separated by 193 nucleotides GFF418 and GFF419 are separated by 19 nucleotides GFF419 and GFF420 are separated by 83 nucleotides
GFF417 - putative patatin-like phospholipase, at 87,237 to 89,507
GFF417
GFF418 - Enoyl-CoA hydratase (EC 4.2.1.17), at 89,701 to 90,465
GFF418
GFF419 - hypothetical protein, at 90,485 to 90,859
GFF419
GFF420 - Salicylate hydroxylase (EC 1.14.13.1), at 90,943 to 92,514
GFF420
Position (kb) 90
91 Strain fitness (log2 ratio) -1
0
1
2 at 89.493 kb on - strand at 89.791 kb on + strand, within GFF418 at 89.791 kb on + strand, within GFF418 at 89.792 kb on - strand, within GFF418 at 89.792 kb on - strand, within GFF418 at 89.792 kb on - strand, within GFF418 at 90.049 kb on + strand, within GFF418 at 90.145 kb on + strand, within GFF418 at 90.486 kb on + strand at 90.486 kb on + strand at 90.598 kb on - strand, within GFF419 at 90.696 kb on + strand, within GFF419 at 90.696 kb on + strand, within GFF419 at 90.697 kb on - strand, within GFF419 at 90.787 kb on - strand, within GFF419 at 91.034 kb on + strand at 91.035 kb on - strand at 91.035 kb on - strand at 91.040 kb on + strand at 91.040 kb on + strand at 91.040 kb on + strand at 91.040 kb on + strand at 91.040 kb on + strand at 91.040 kb on + strand at 91.041 kb on - strand at 91.041 kb on - strand at 91.041 kb on - strand at 91.041 kb on - strand at 91.041 kb on - strand at 91.041 kb on - strand at 91.041 kb on - strand at 91.497 kb on - strand, within GFF420
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 89,493 - +1.5 89,791 + GFF418 0.12 +0.5 89,791 + GFF418 0.12 +0.5 89,792 - GFF418 0.12 +2.1 89,792 - GFF418 0.12 +1.8 89,792 - GFF418 0.12 +0.0 90,049 + GFF418 0.45 -0.5 90,145 + GFF418 0.58 -0.2 90,486 + -0.1 90,486 + +0.8 90,598 - GFF419 0.30 +0.9 90,696 + GFF419 0.56 +0.3 90,696 + GFF419 0.56 -1.4 90,697 - GFF419 0.57 +0.9 90,787 - GFF419 0.81 +0.5 91,034 + +0.6 91,035 - +0.0 91,035 - -1.4 91,040 + +0.0 91,040 + -0.3 91,040 + -0.3 91,040 + +0.0 91,040 + -0.7 91,040 + -0.2 91,041 - +0.0 91,041 - +0.6 91,041 - +1.0 91,041 - +0.9 91,041 - +0.3 91,041 - +0.3 91,041 - +1.4 91,497 - GFF420 0.35 +0.1
Or see this region's nucleotide sequence