Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4145 and GFF4146 are separated by 72 nucleotides GFF4146 and GFF4147 are separated by 175 nucleotides
GFF4145 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,055,210 to 1,056,094
GFF4145
GFF4146 - hypothetical protein, at 1,056,167 to 1,056,283
GFF4146
GFF4147 - Isocitrate lyase (EC 4.1.3.1), at 1,056,459 to 1,057,790
GFF4147
Position (kb)
1056
1057
1058 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 1055.604 kb on + strand, within GFF4145 at 1055.604 kb on + strand, within GFF4145 at 1055.604 kb on + strand, within GFF4145 at 1055.604 kb on + strand, within GFF4145 at 1055.604 kb on + strand, within GFF4145 at 1055.605 kb on - strand, within GFF4145 at 1055.605 kb on - strand, within GFF4145 at 1055.605 kb on - strand, within GFF4145 at 1055.669 kb on + strand, within GFF4145 at 1055.976 kb on + strand, within GFF4145 at 1056.075 kb on + strand at 1056.075 kb on + strand at 1056.075 kb on + strand at 1056.076 kb on - strand at 1056.076 kb on - strand at 1056.076 kb on - strand at 1056.076 kb on - strand at 1056.076 kb on - strand at 1056.098 kb on + strand at 1056.098 kb on + strand at 1056.098 kb on + strand at 1056.114 kb on + strand at 1056.114 kb on + strand at 1056.114 kb on + strand at 1056.348 kb on + strand at 1056.355 kb on + strand at 1056.376 kb on + strand at 1056.376 kb on + strand at 1056.376 kb on + strand at 1056.377 kb on - strand at 1056.385 kb on + strand at 1056.453 kb on - strand at 1056.453 kb on - strand at 1056.675 kb on + strand, within GFF4147 at 1056.675 kb on + strand, within GFF4147 at 1056.676 kb on - strand, within GFF4147 at 1056.676 kb on - strand, within GFF4147 at 1056.676 kb on - strand, within GFF4147 at 1056.676 kb on - strand, within GFF4147 at 1056.747 kb on + strand, within GFF4147 at 1056.747 kb on + strand, within GFF4147 at 1056.747 kb on + strand, within GFF4147 at 1056.747 kb on + strand, within GFF4147 at 1056.747 kb on + strand, within GFF4147 at 1056.747 kb on + strand, within GFF4147 at 1056.748 kb on - strand, within GFF4147 at 1056.748 kb on - strand, within GFF4147 at 1056.748 kb on - strand, within GFF4147 at 1056.748 kb on - strand, within GFF4147 at 1056.798 kb on + strand, within GFF4147 at 1056.798 kb on + strand, within GFF4147 at 1056.798 kb on + strand, within GFF4147 at 1056.798 kb on + strand, within GFF4147 at 1056.798 kb on + strand, within GFF4147 at 1056.799 kb on - strand, within GFF4147 at 1056.823 kb on - strand, within GFF4147 at 1056.930 kb on + strand, within GFF4147 at 1057.317 kb on + strand, within GFF4147 at 1057.317 kb on + strand, within GFF4147 at 1057.317 kb on + strand, within GFF4147 at 1057.317 kb on + strand, within GFF4147 at 1057.318 kb on - strand, within GFF4147 at 1057.318 kb on - strand, within GFF4147 at 1057.428 kb on + strand, within GFF4147 at 1057.429 kb on - strand, within GFF4147 at 1057.429 kb on - strand, within GFF4147 at 1057.429 kb on - strand, within GFF4147 at 1057.515 kb on + strand, within GFF4147 at 1057.515 kb on + strand, within GFF4147 at 1057.515 kb on + strand, within GFF4147 at 1057.515 kb on + strand, within GFF4147 at 1057.516 kb on - strand, within GFF4147 at 1057.521 kb on + strand, within GFF4147 at 1057.521 kb on + strand, within GFF4147 at 1057.522 kb on - strand, within GFF4147 at 1057.522 kb on - strand, within GFF4147 at 1057.522 kb on - strand, within GFF4147 at 1057.588 kb on - strand, within GFF4147 at 1057.588 kb on - strand, within GFF4147 at 1057.588 kb on - strand, within GFF4147 at 1057.588 kb on - strand, within GFF4147 at 1057.663 kb on - strand at 1057.663 kb on - strand at 1057.663 kb on - strand at 1057.701 kb on + strand at 1057.767 kb on - strand at 1057.914 kb on - strand at 1057.914 kb on - strand at 1057.914 kb on - strand at 1057.914 kb on - strand at 1058.174 kb on + strand at 1058.212 kb on + strand at 1058.212 kb on + strand at 1058.212 kb on + strand at 1058.213 kb on - strand at 1058.213 kb on - strand at 1058.213 kb on - strand at 1058.213 kb on - strand at 1058.215 kb on + strand at 1058.215 kb on + strand at 1058.215 kb on + strand at 1058.215 kb on + strand at 1058.215 kb on + strand at 1058.215 kb on + strand at 1058.215 kb on + strand at 1058.215 kb on + strand at 1058.225 kb on - strand at 1058.225 kb on - strand at 1058.264 kb on + strand at 1058.277 kb on + strand at 1058.278 kb on + strand at 1058.278 kb on - strand at 1058.278 kb on - strand at 1058.278 kb on - strand at 1058.278 kb on - strand at 1058.278 kb on - strand at 1058.373 kb on + strand at 1058.373 kb on + strand at 1058.373 kb on + strand at 1058.373 kb on + strand at 1058.374 kb on - strand at 1058.374 kb on - strand at 1058.399 kb on + strand at 1058.399 kb on + strand at 1058.400 kb on - strand at 1058.400 kb on - strand at 1058.400 kb on - strand at 1058.400 kb on - strand at 1058.400 kb on - strand at 1058.400 kb on - strand at 1058.449 kb on + strand at 1058.449 kb on + strand at 1058.449 kb on + strand at 1058.449 kb on + strand at 1058.450 kb on - strand at 1058.450 kb on - strand at 1058.450 kb on - strand at 1058.491 kb on + strand at 1058.497 kb on + strand at 1058.497 kb on + strand at 1058.497 kb on + strand at 1058.497 kb on + strand at 1058.497 kb on + strand at 1058.497 kb on + strand at 1058.498 kb on - strand at 1058.498 kb on - strand at 1058.640 kb on - strand at 1058.640 kb on - strand at 1058.652 kb on - strand at 1058.713 kb on + strand at 1058.714 kb on - strand at 1058.714 kb on - strand at 1058.763 kb on + strand at 1058.778 kb on + strand at 1058.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 1,055,604 + GFF4145 0.45 -0.1 1,055,604 + GFF4145 0.45 -1.0 1,055,604 + GFF4145 0.45 -0.6 1,055,604 + GFF4145 0.45 +1.2 1,055,604 + GFF4145 0.45 -0.4 1,055,605 - GFF4145 0.45 -0.6 1,055,605 - GFF4145 0.45 +0.1 1,055,605 - GFF4145 0.45 -0.1 1,055,669 + GFF4145 0.52 +0.2 1,055,976 + GFF4145 0.87 +0.1 1,056,075 + +0.3 1,056,075 + +2.3 1,056,075 + -0.3 1,056,076 - +0.5 1,056,076 - +0.0 1,056,076 - +0.2 1,056,076 - -1.6 1,056,076 - +0.5 1,056,098 + +1.1 1,056,098 + -0.0 1,056,098 + +0.2 1,056,114 + -0.2 1,056,114 + +0.7 1,056,114 + -0.6 1,056,348 + -0.9 1,056,355 + -0.3 1,056,376 + -2.2 1,056,376 + -2.9 1,056,376 + -2.6 1,056,377 - -4.2 1,056,385 + +0.5 1,056,453 - -4.3 1,056,453 - -3.8 1,056,675 + GFF4147 0.16 -2.9 1,056,675 + GFF4147 0.16 -2.7 1,056,676 - GFF4147 0.16 -5.7 1,056,676 - GFF4147 0.16 -1.2 1,056,676 - GFF4147 0.16 -2.7 1,056,676 - GFF4147 0.16 -2.2 1,056,747 + GFF4147 0.22 -3.9 1,056,747 + GFF4147 0.22 -2.8 1,056,747 + GFF4147 0.22 -5.4 1,056,747 + GFF4147 0.22 -4.2 1,056,747 + GFF4147 0.22 -2.1 1,056,747 + GFF4147 0.22 -2.3 1,056,748 - GFF4147 0.22 -1.2 1,056,748 - GFF4147 0.22 -3.6 1,056,748 - GFF4147 0.22 -3.2 1,056,748 - GFF4147 0.22 -3.5 1,056,798 + GFF4147 0.25 -4.6 1,056,798 + GFF4147 0.25 -3.1 1,056,798 + GFF4147 0.25 -2.7 1,056,798 + GFF4147 0.25 -3.8 1,056,798 + GFF4147 0.25 -1.8 1,056,799 - GFF4147 0.26 -4.2 1,056,823 - GFF4147 0.27 -6.1 1,056,930 + GFF4147 0.35 -3.2 1,057,317 + GFF4147 0.64 -4.2 1,057,317 + GFF4147 0.64 -3.6 1,057,317 + GFF4147 0.64 -4.1 1,057,317 + GFF4147 0.64 -0.8 1,057,318 - GFF4147 0.64 -0.2 1,057,318 - GFF4147 0.64 -4.0 1,057,428 + GFF4147 0.73 -4.2 1,057,429 - GFF4147 0.73 -2.8 1,057,429 - GFF4147 0.73 -2.9 1,057,429 - GFF4147 0.73 -2.2 1,057,515 + GFF4147 0.79 -3.4 1,057,515 + GFF4147 0.79 -5.8 1,057,515 + GFF4147 0.79 -3.1 1,057,515 + GFF4147 0.79 -3.2 1,057,516 - GFF4147 0.79 -5.2 1,057,521 + GFF4147 0.80 -3.5 1,057,521 + GFF4147 0.80 -1.8 1,057,522 - GFF4147 0.80 -3.9 1,057,522 - GFF4147 0.80 -3.1 1,057,522 - GFF4147 0.80 -1.6 1,057,588 - GFF4147 0.85 -2.8 1,057,588 - GFF4147 0.85 -6.3 1,057,588 - GFF4147 0.85 -0.8 1,057,588 - GFF4147 0.85 -3.9 1,057,663 - -2.9 1,057,663 - -4.9 1,057,663 - -2.4 1,057,701 + -4.7 1,057,767 - -1.6 1,057,914 - +0.8 1,057,914 - +0.1 1,057,914 - -0.0 1,057,914 - -0.6 1,058,174 + -0.2 1,058,212 + +2.3 1,058,212 + +1.0 1,058,212 + +0.2 1,058,213 - -1.7 1,058,213 - +0.1 1,058,213 - -0.3 1,058,213 - +0.4 1,058,215 + +0.7 1,058,215 + -0.1 1,058,215 + -0.1 1,058,215 + +0.8 1,058,215 + -0.5 1,058,215 + +0.4 1,058,215 + -0.2 1,058,215 + +0.6 1,058,225 - -0.4 1,058,225 - +0.7 1,058,264 + -0.1 1,058,277 + +0.4 1,058,278 + +0.4 1,058,278 - -1.4 1,058,278 - -0.4 1,058,278 - -0.6 1,058,278 - +0.2 1,058,278 - +0.1 1,058,373 + -0.0 1,058,373 + -0.2 1,058,373 + +0.4 1,058,373 + -0.2 1,058,374 - +1.8 1,058,374 - +0.1 1,058,399 + -0.1 1,058,399 + +0.1 1,058,400 - -0.2 1,058,400 - +0.3 1,058,400 - -0.4 1,058,400 - -0.2 1,058,400 - -0.7 1,058,400 - +0.3 1,058,449 + +0.1 1,058,449 + +0.1 1,058,449 + -0.0 1,058,449 + +0.5 1,058,450 - +0.1 1,058,450 - +0.4 1,058,450 - +0.1 1,058,491 + -0.5 1,058,497 + +0.3 1,058,497 + -0.4 1,058,497 + +0.8 1,058,497 + +0.4 1,058,497 + -0.7 1,058,497 + +1.3 1,058,498 - +1.2 1,058,498 - +0.3 1,058,640 - -0.9 1,058,640 - -0.3 1,058,652 - -0.1 1,058,713 + -0.4 1,058,714 - +0.2 1,058,714 - -1.2 1,058,763 + -0.5 1,058,778 + +0.8 1,058,779 - -0.6
Or see this region's nucleotide sequence