Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4147

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,055,604	+		GFF4145	0.45	-0.1
1,055,604	+		GFF4145	0.45	-1.0
1,055,604	+		GFF4145	0.45	-0.6
1,055,604	+		GFF4145	0.45	+1.2
1,055,604	+		GFF4145	0.45	-0.4
1,055,605	-		GFF4145	0.45	-0.6
1,055,605	-		GFF4145	0.45	+0.1
1,055,605	-		GFF4145	0.45	-0.1
1,055,669	+		GFF4145	0.52	+0.2
1,055,976	+		GFF4145	0.87	+0.1
1,056,075	+				+0.3
1,056,075	+				+2.3
1,056,075	+				-0.3
1,056,076	-				+0.5
1,056,076	-				+0.0
1,056,076	-				+0.2
1,056,076	-				-1.6
1,056,076	-				+0.5
1,056,098	+				+1.1
1,056,098	+				-0.0
1,056,098	+				+0.2
1,056,114	+				-0.2
1,056,114	+				+0.7
1,056,114	+				-0.6
1,056,348	+				-0.9
1,056,355	+				-0.3
1,056,376	+				-2.2
1,056,376	+				-2.9
1,056,376	+				-2.6
1,056,377	-				-4.2
1,056,385	+				+0.5
1,056,453	-				-4.3
1,056,453	-				-3.8
1,056,675	+		GFF4147	0.16	-2.9
1,056,675	+		GFF4147	0.16	-2.7
1,056,676	-		GFF4147	0.16	-5.7
1,056,676	-		GFF4147	0.16	-1.2
1,056,676	-		GFF4147	0.16	-2.7
1,056,676	-		GFF4147	0.16	-2.2
1,056,747	+		GFF4147	0.22	-3.9
1,056,747	+		GFF4147	0.22	-2.8
1,056,747	+		GFF4147	0.22	-5.4
1,056,747	+		GFF4147	0.22	-4.2
1,056,747	+		GFF4147	0.22	-2.1
1,056,747	+		GFF4147	0.22	-2.3
1,056,748	-		GFF4147	0.22	-1.2
1,056,748	-		GFF4147	0.22	-3.6
1,056,748	-		GFF4147	0.22	-3.2
1,056,748	-		GFF4147	0.22	-3.5
1,056,798	+		GFF4147	0.25	-4.6
1,056,798	+		GFF4147	0.25	-3.1
1,056,798	+		GFF4147	0.25	-2.7
1,056,798	+		GFF4147	0.25	-3.8
1,056,798	+		GFF4147	0.25	-1.8
1,056,799	-		GFF4147	0.26	-4.2
1,056,823	-		GFF4147	0.27	-6.1
1,056,930	+		GFF4147	0.35	-3.2
1,057,317	+		GFF4147	0.64	-4.2
1,057,317	+		GFF4147	0.64	-3.6
1,057,317	+		GFF4147	0.64	-4.1
1,057,317	+		GFF4147	0.64	-0.8
1,057,318	-		GFF4147	0.64	-0.2
1,057,318	-		GFF4147	0.64	-4.0
1,057,428	+		GFF4147	0.73	-4.2
1,057,429	-		GFF4147	0.73	-2.8
1,057,429	-		GFF4147	0.73	-2.9
1,057,429	-		GFF4147	0.73	-2.2
1,057,515	+		GFF4147	0.79	-3.4
1,057,515	+		GFF4147	0.79	-5.8
1,057,515	+		GFF4147	0.79	-3.1
1,057,515	+		GFF4147	0.79	-3.2
1,057,516	-		GFF4147	0.79	-5.2
1,057,521	+		GFF4147	0.80	-3.5
1,057,521	+		GFF4147	0.80	-1.8
1,057,522	-		GFF4147	0.80	-3.9
1,057,522	-		GFF4147	0.80	-3.1
1,057,522	-		GFF4147	0.80	-1.6
1,057,588	-		GFF4147	0.85	-2.8
1,057,588	-		GFF4147	0.85	-6.3
1,057,588	-		GFF4147	0.85	-0.8
1,057,588	-		GFF4147	0.85	-3.9
1,057,663	-				-2.9
1,057,663	-				-4.9
1,057,663	-				-2.4
1,057,701	+				-4.7
1,057,767	-				-1.6
1,057,914	-				+0.8
1,057,914	-				+0.1
1,057,914	-				-0.0
1,057,914	-				-0.6
1,058,174	+				-0.2
1,058,212	+				+2.3
1,058,212	+				+1.0
1,058,212	+				+0.2
1,058,213	-				-1.7
1,058,213	-				+0.1
1,058,213	-				-0.3
1,058,213	-				+0.4
1,058,215	+				+0.7
1,058,215	+				-0.1
1,058,215	+				-0.1
1,058,215	+				+0.8
1,058,215	+				-0.5
1,058,215	+				+0.4
1,058,215	+				-0.2
1,058,215	+				+0.6
1,058,225	-				-0.4
1,058,225	-				+0.7
1,058,264	+				-0.1
1,058,277	+				+0.4
1,058,278	+				+0.4
1,058,278	-				-1.4
1,058,278	-				-0.4
1,058,278	-				-0.6
1,058,278	-				+0.2
1,058,278	-				+0.1
1,058,373	+				-0.0
1,058,373	+				-0.2
1,058,373	+				+0.4
1,058,373	+				-0.2
1,058,374	-				+1.8
1,058,374	-				+0.1
1,058,399	+				-0.1
1,058,399	+				+0.1
1,058,400	-				-0.2
1,058,400	-				+0.3
1,058,400	-				-0.4
1,058,400	-				-0.2
1,058,400	-				-0.7
1,058,400	-				+0.3
1,058,449	+				+0.1
1,058,449	+				+0.1
1,058,449	+				-0.0
1,058,449	+				+0.5
1,058,450	-				+0.1
1,058,450	-				+0.4
1,058,450	-				+0.1
1,058,491	+				-0.5
1,058,497	+				+0.3
1,058,497	+				-0.4
1,058,497	+				+0.8
1,058,497	+				+0.4
1,058,497	+				-0.7
1,058,497	+				+1.3
1,058,498	-				+1.2
1,058,498	-				+0.3
1,058,640	-				-0.9
1,058,640	-				-0.3
1,058,652	-				-0.1
1,058,713	+				-0.4
1,058,714	-				+0.2
1,058,714	-				-1.2
1,058,763	+				-0.5
1,058,778	+				+0.8
1,058,779	-				-0.6