Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4010 and GFF4011 are separated by 19 nucleotides GFF4011 and GFF4012 are separated by 12 nucleotides GFF4012 and GFF4013 are separated by 113 nucleotides GFF4013 and GFF4014 are separated by 140 nucleotides
GFF4010 - Homoserine/homoserine lactone efflux protein, at 927,350 to 927,970
GFF4010
GFF4011 - two-component response regulator, at 927,990 to 928,583
GFF4011
GFF4012 - Two-component hybrid sensor and regulator, at 928,596 to 930,353
GFF4012
GFF4013 - hypothetical protein, at 930,467 to 930,775
GFF4013
GFF4014 - DUF1232 domain-containing protein, at 930,916 to 931,284
GFF4014
Position (kb) 928
929
930
931 Strain fitness (log2 ratio) -2
-1
0
1 at 928.282 kb on - strand, within GFF4011 at 928.282 kb on - strand, within GFF4011 at 928.777 kb on - strand, within GFF4012 at 928.777 kb on - strand, within GFF4012 at 928.777 kb on - strand, within GFF4012 at 928.777 kb on - strand, within GFF4012 at 928.777 kb on - strand, within GFF4012 at 928.797 kb on + strand, within GFF4012 at 928.797 kb on + strand, within GFF4012 at 928.797 kb on + strand, within GFF4012 at 928.798 kb on - strand, within GFF4012 at 929.065 kb on - strand, within GFF4012 at 929.646 kb on + strand, within GFF4012 at 929.646 kb on + strand, within GFF4012 at 929.646 kb on + strand, within GFF4012 at 930.548 kb on + strand, within GFF4013 at 930.605 kb on + strand, within GFF4013 at 930.606 kb on - strand, within GFF4013 at 930.794 kb on + strand at 930.958 kb on + strand, within GFF4014 at 930.991 kb on + strand, within GFF4014 at 931.170 kb on + strand, within GFF4014 at 931.171 kb on - strand, within GFF4014
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 928,282 - GFF4011 0.49 -0.3 928,282 - GFF4011 0.49 +1.2 928,777 - GFF4012 0.10 -0.1 928,777 - GFF4012 0.10 -0.1 928,777 - GFF4012 0.10 -0.7 928,777 - GFF4012 0.10 -0.5 928,777 - GFF4012 0.10 -0.0 928,797 + GFF4012 0.11 -0.8 928,797 + GFF4012 0.11 -0.3 928,797 + GFF4012 0.11 +0.2 928,798 - GFF4012 0.11 +0.5 929,065 - GFF4012 0.27 +0.3 929,646 + GFF4012 0.60 +0.1 929,646 + GFF4012 0.60 -0.3 929,646 + GFF4012 0.60 -0.0 930,548 + GFF4013 0.26 -0.8 930,605 + GFF4013 0.45 -0.3 930,606 - GFF4013 0.45 +0.6 930,794 + -0.1 930,958 + GFF4014 0.11 +0.8 930,991 + GFF4014 0.20 -1.8 931,170 + GFF4014 0.69 +0.3 931,171 - GFF4014 0.69 -1.2
Or see this region's nucleotide sequence