Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3752

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
645,723	+				-0.0
645,723	+				+0.5
645,793	-		GFF3751	0.15	+0.1
645,864	+		GFF3751	0.22	-0.5
646,005	+		GFF3751	0.36	+2.2
646,005	+		GFF3751	0.36	+0.4
646,006	-		GFF3751	0.36	-1.2
646,006	-		GFF3751	0.36	+0.2
646,006	-		GFF3751	0.36	+1.3
646,194	+		GFF3751	0.55	+1.4
646,194	+		GFF3751	0.55	+0.2
646,195	-		GFF3751	0.55	-0.4
646,195	-		GFF3751	0.55	-0.5
646,197	+		GFF3751	0.55	+0.8
646,197	+		GFF3751	0.55	+2.6
646,198	-		GFF3751	0.55	-0.5
646,198	-		GFF3751	0.55	+0.2
646,198	-		GFF3751	0.55	+0.4
646,212	+		GFF3751	0.56	-0.5
646,213	-		GFF3751	0.56	+0.4
646,470	+		GFF3751	0.82	-0.1
646,536	+		GFF3751	0.89	+0.1
646,536	+		GFF3751	0.89	+0.2
646,536	+		GFF3751	0.89	+0.1
646,536	+		GFF3751	0.89	-0.3
646,537	-		GFF3751	0.89	+0.2
646,616	+				-0.3
646,751	-				+0.5
647,080	+		GFF3752	0.46	-0.5
647,081	-		GFF3752	0.46	+1.2
647,081	-		GFF3752	0.46	+0.9
647,645	+				+0.2
647,645	+				-0.5
647,714	+				-0.1
647,721	+				-0.1
647,721	+				-1.0
647,722	-				+0.2
647,722	-				-0.7
647,722	-				+0.1
647,725	-				+0.6
647,725	-				+0.2
647,772	-				-0.7
648,066	+				-0.2
648,067	-				-0.2
648,067	-				-0.1
648,108	+				-0.7
648,147	+		GFF3754	0.14	-0.0
648,148	-		GFF3754	0.14	-0.5
648,180	+		GFF3754	0.21	+1.3
648,181	-		GFF3754	0.21	+0.1
648,181	-		GFF3754	0.21	-0.2
648,511	-		GFF3754	0.90	-0.3