Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF372

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF371 and GFF372 are separated by 6 nucleotidesGFF372 and GFF373 overlap by 4 nucleotidesGFF373 and GFF374 are separated by 6 nucleotides GFF371 - MgtC family, at 34,210 to 35,493 GFF371 GFF372 - Glutathione reductase (EC 1.8.1.7), at 35,500 to 36,900 GFF372 GFF373 - TcuR: regulates tcuABC genes used in utilization of tricarballylate, at 36,897 to 37,802 GFF373 GFF374 - hypothetical protein, at 37,809 to 37,922 GFF374 Position (kb) 35 36 37Strain fitness (log2 ratio) -1 0 1at 34.516 kb on + strand, within GFF371at 34.516 kb on + strand, within GFF371at 34.516 kb on + strand, within GFF371at 36.096 kb on - strand, within GFF372at 36.096 kb on - strand, within GFF372at 36.589 kb on + strand, within GFF372at 36.590 kb on + strand, within GFF372at 36.590 kb on + strand, within GFF372at 36.591 kb on - strand, within GFF372at 36.591 kb on - strand, within GFF372at 36.707 kb on + strand, within GFF372at 36.725 kb on + strand, within GFF372at 37.082 kb on - strand, within GFF373at 37.684 kb on + strand, within GFF373at 37.811 kb on - strandat 37.847 kb on + strand, within GFF374

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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34,516 + GFF371 0.24 -0.6
34,516 + GFF371 0.24 -0.2
34,516 + GFF371 0.24 -0.0
36,096 - GFF372 0.43 +1.2
36,096 - GFF372 0.43 -0.2
36,589 + GFF372 0.78 -0.2
36,590 + GFF372 0.78 +0.6
36,590 + GFF372 0.78 +1.7
36,591 - GFF372 0.78 +0.8
36,591 - GFF372 0.78 +0.6
36,707 + GFF372 0.86 +0.9
36,725 + GFF372 0.87 -0.2
37,082 - GFF373 0.20 -0.5
37,684 + GFF373 0.87 -0.3
37,811 - +0.8
37,847 + GFF374 0.33 -0.2

Or see this region's nucleotide sequence