Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3694 and GFF3695 are separated by 31 nucleotides GFF3695 and GFF3696 are separated by 5 nucleotides GFF3696 and GFF3697 overlap by 4 nucleotides
GFF3694 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 584,619 to 586,127
GFF3694
GFF3695 - FIG003089: Probable transmembrane protein, at 586,159 to 586,485
GFF3695
GFF3696 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 586,491 to 587,099
GFF3696
GFF3697 - identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676, at 587,096 to 587,569
GFF3697
Position (kb) 586
587 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 585.669 kb on + strand, within GFF3694 at 585.670 kb on - strand, within GFF3694 at 585.843 kb on + strand, within GFF3694 at 585.945 kb on + strand, within GFF3694 at 585.945 kb on + strand, within GFF3694 at 585.945 kb on + strand, within GFF3694 at 585.945 kb on + strand, within GFF3694 at 585.948 kb on + strand, within GFF3694 at 585.948 kb on + strand, within GFF3694 at 585.972 kb on + strand, within GFF3694 at 586.330 kb on + strand, within GFF3695 at 586.330 kb on + strand, within GFF3695 at 586.406 kb on - strand, within GFF3695 at 586.845 kb on + strand, within GFF3696 at 587.165 kb on + strand, within GFF3697 at 587.165 kb on + strand, within GFF3697 at 587.165 kb on + strand, within GFF3697 at 587.166 kb on - strand, within GFF3697 at 587.166 kb on - strand, within GFF3697 at 587.166 kb on - strand, within GFF3697
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 585,669 + GFF3694 0.70 -0.8 585,670 - GFF3694 0.70 -2.4 585,843 + GFF3694 0.81 -0.2 585,945 + GFF3694 0.88 -1.4 585,945 + GFF3694 0.88 -0.2 585,945 + GFF3694 0.88 -1.2 585,945 + GFF3694 0.88 -0.6 585,948 + GFF3694 0.88 -0.6 585,948 + GFF3694 0.88 +0.8 585,972 + GFF3694 0.90 -2.8 586,330 + GFF3695 0.52 -1.6 586,330 + GFF3695 0.52 -3.6 586,406 - GFF3695 0.76 -2.6 586,845 + GFF3696 0.58 -0.4 587,165 + GFF3697 0.15 +1.5 587,165 + GFF3697 0.15 -0.1 587,165 + GFF3697 0.15 -0.6 587,166 - GFF3697 0.15 -0.3 587,166 - GFF3697 0.15 +0.9 587,166 - GFF3697 0.15 -0.2
Or see this region's nucleotide sequence