Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF368

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF367 and GFF368 are separated by 211 nucleotidesGFF368 and GFF369 overlap by 4 nucleotides GFF367 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 28,386 to 30,659 GFF367 GFF368 - miscellaneous; hypothetical/global homology, at 30,871 to 31,362 GFF368 GFF369 - Trypsin domain protein, at 31,359 to 32,627 GFF369 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1at 30.355 kb on + strand, within GFF367at 30.355 kb on + strand, within GFF367at 30.355 kb on + strand, within GFF367at 30.356 kb on - strand, within GFF367at 30.356 kb on - strand, within GFF367at 30.356 kb on - strand, within GFF367at 30.690 kb on - strandat 30.690 kb on - strandat 30.734 kb on + strandat 30.734 kb on + strandat 30.735 kb on - strandat 30.735 kb on - strandat 30.735 kb on - strandat 30.744 kb on + strandat 30.922 kb on + strand, within GFF368at 31.108 kb on + strand, within GFF368at 31.108 kb on + strand, within GFF368at 31.603 kb on - strand, within GFF369at 31.603 kb on - strand, within GFF369at 32.103 kb on + strand, within GFF369at 32.103 kb on + strand, within GFF369at 32.103 kb on + strand, within GFF369at 32.104 kb on - strand, within GFF369at 32.104 kb on - strand, within GFF369at 32.121 kb on + strand, within GFF369at 32.122 kb on - strand, within GFF369

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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30,355 + GFF367 0.87 +0.0
30,355 + GFF367 0.87 -0.0
30,355 + GFF367 0.87 -0.8
30,356 - GFF367 0.87 +1.1
30,356 - GFF367 0.87 +0.1
30,356 - GFF367 0.87 +0.6
30,690 - -0.5
30,690 - +0.1
30,734 + +0.3
30,734 + -1.0
30,735 - +0.1
30,735 - +0.1
30,735 - +0.4
30,744 + +0.2
30,922 + GFF368 0.10 -0.7
31,108 + GFF368 0.48 -1.3
31,108 + GFF368 0.48 +1.4
31,603 - GFF369 0.19 -0.3
31,603 - GFF369 0.19 -0.3
32,103 + GFF369 0.59 +0.5
32,103 + GFF369 0.59 -0.2
32,103 + GFF369 0.59 -0.2
32,104 - GFF369 0.59 +0.2
32,104 - GFF369 0.59 +0.1
32,121 + GFF369 0.60 +1.5
32,122 - GFF369 0.60 +0.5

Or see this region's nucleotide sequence