Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3588

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3586 and GFF3587 are separated by 9 nucleotidesGFF3587 and GFF3588 overlap by 23 nucleotidesGFF3588 and GFF3589 overlap by 4 nucleotides GFF3586 - Probable signal peptide protein, at 473,269 to 473,688 GFF3586 GFF3587 - Formiminoglutamase (EC 3.5.3.8), at 473,698 to 474,639 GFF3587 GFF3588 - Imidazolonepropionase (EC 3.5.2.7), at 474,617 to 475,858 GFF3588 GFF3589 - Histidine ammonia-lyase (EC 4.3.1.3), at 475,855 to 477,360 GFF3589 Position (kb) 474 475 476Strain fitness (log2 ratio) -1 0 1at 473.663 kb on - strandat 473.934 kb on - strand, within GFF3587at 474.024 kb on - strand, within GFF3587at 474.098 kb on + strand, within GFF3587at 474.099 kb on - strand, within GFF3587at 474.699 kb on + strandat 474.700 kb on - strandat 474.984 kb on + strand, within GFF3588at 475.575 kb on + strand, within GFF3588at 475.576 kb on - strand, within GFF3588

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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473,663 - -0.3
473,934 - GFF3587 0.25 -0.4
474,024 - GFF3587 0.35 +0.1
474,098 + GFF3587 0.42 +0.0
474,099 - GFF3587 0.43 -0.5
474,699 + +0.7
474,700 - +0.2
474,984 + GFF3588 0.30 -0.0
475,575 + GFF3588 0.77 -1.3
475,576 - GFF3588 0.77 -0.5

Or see this region's nucleotide sequence