Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3531

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3530 and GFF3531 are separated by 266 nucleotidesGFF3531 and GFF3532 are separated by 122 nucleotidesGFF3532 and GFF3533 are separated by 105 nucleotides GFF3530 - ATP-dependent RNA helicase RhlE, at 417,556 to 419,382 GFF3530 GFF3531 - ABC transporter, at 419,649 to 421,310 GFF3531 GFF3532 - hypothetical protein, at 421,433 to 421,984 GFF3532 GFF3533 - Thymidine phosphorylase (EC 2.4.2.4), at 422,090 to 424,201 GFF3533 Position (kb) 419 420 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 419.342 kb on + strandat 419.342 kb on + strandat 419.342 kb on + strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.522 kb on + strandat 419.522 kb on + strandat 419.522 kb on + strandat 419.522 kb on + strandat 419.523 kb on - strandat 419.523 kb on - strandat 419.523 kb on - strandat 419.536 kb on - strandat 419.536 kb on - strandat 419.593 kb on + strandat 419.658 kb on + strandat 419.658 kb on + strandat 419.658 kb on + strandat 419.658 kb on + strandat 419.658 kb on + strandat 419.658 kb on + strandat 419.659 kb on - strandat 419.659 kb on - strandat 419.659 kb on - strandat 419.659 kb on - strandat 419.659 kb on - strandat 419.659 kb on - strandat 419.865 kb on + strand, within GFF3531at 419.865 kb on + strand, within GFF3531at 419.866 kb on - strand, within GFF3531at 419.866 kb on - strand, within GFF3531at 419.866 kb on - strand, within GFF3531at 419.970 kb on + strand, within GFF3531at 419.971 kb on - strand, within GFF3531at 419.979 kb on + strand, within GFF3531at 419.980 kb on - strand, within GFF3531at 419.980 kb on - strand, within GFF3531at 420.259 kb on + strand, within GFF3531at 420.259 kb on + strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.303 kb on + strand, within GFF3531at 420.303 kb on + strand, within GFF3531at 420.304 kb on - strand, within GFF3531at 420.304 kb on - strand, within GFF3531at 420.304 kb on - strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.375 kb on + strand, within GFF3531at 420.375 kb on + strand, within GFF3531at 420.375 kb on + strand, within GFF3531at 420.375 kb on + strand, within GFF3531at 420.375 kb on + strand, within GFF3531at 420.376 kb on - strand, within GFF3531at 420.376 kb on - strand, within GFF3531at 420.376 kb on - strand, within GFF3531at 420.376 kb on - strand, within GFF3531at 420.376 kb on - strand, within GFF3531at 420.376 kb on - strand, within GFF3531at 420.744 kb on + strand, within GFF3531at 420.924 kb on + strand, within GFF3531at 420.924 kb on + strand, within GFF3531at 420.925 kb on - strand, within GFF3531at 420.925 kb on - strand, within GFF3531at 421.224 kb on + strandat 421.224 kb on + strandat 421.225 kb on - strandat 421.225 kb on - strandat 421.233 kb on + strandat 421.233 kb on + strandat 421.308 kb on + strandat 421.308 kb on + strandat 421.309 kb on - strandat 421.309 kb on - strandat 421.529 kb on + strand, within GFF3532at 421.529 kb on + strand, within GFF3532at 421.529 kb on + strand, within GFF3532at 421.530 kb on - strand, within GFF3532at 421.530 kb on - strand, within GFF3532at 421.530 kb on - strand, within GFF3532at 421.530 kb on - strand, within GFF3532at 422.015 kb on + strandat 422.015 kb on + strandat 422.016 kb on - strandat 422.016 kb on - strandat 422.026 kb on + strandat 422.026 kb on + strandat 422.026 kb on + strandat 422.026 kb on + strandat 422.026 kb on + strandat 422.040 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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419,342 + +0.4
419,342 + +0.5
419,342 + -0.1
419,343 - +0.2
419,343 - +0.3
419,343 - +0.2
419,343 - -0.2
419,343 - +0.4
419,343 - -0.2
419,343 - -0.2
419,343 - +0.8
419,522 + -0.7
419,522 + +0.2
419,522 + +0.9
419,522 + +0.5
419,523 - +0.1
419,523 - -0.8
419,523 - +0.2
419,536 - +0.2
419,536 - +0.8
419,593 + -1.2
419,658 + -0.2
419,658 + -1.6
419,658 + -1.2
419,658 + -0.2
419,658 + -1.5
419,658 + -1.4
419,659 - -1.6
419,659 - -1.4
419,659 - -0.2
419,659 - -0.8
419,659 - -3.2
419,659 - -0.6
419,865 + GFF3531 0.13 -1.3
419,865 + GFF3531 0.13 -1.2
419,866 - GFF3531 0.13 -0.8
419,866 - GFF3531 0.13 -1.1
419,866 - GFF3531 0.13 +1.3
419,970 + GFF3531 0.19 -1.7
419,971 - GFF3531 0.19 -0.5
419,979 + GFF3531 0.20 -0.2
419,980 - GFF3531 0.20 -1.0
419,980 - GFF3531 0.20 -1.1
420,259 + GFF3531 0.37 -1.4
420,259 + GFF3531 0.37 -0.7
420,260 - GFF3531 0.37 -1.3
420,260 - GFF3531 0.37 -1.5
420,260 - GFF3531 0.37 -2.2
420,260 - GFF3531 0.37 +1.8
420,260 - GFF3531 0.37 -0.8
420,260 - GFF3531 0.37 -1.3
420,260 - GFF3531 0.37 -1.3
420,260 - GFF3531 0.37 -1.0
420,260 - GFF3531 0.37 -1.6
420,303 + GFF3531 0.39 -0.0
420,303 + GFF3531 0.39 -1.0
420,304 - GFF3531 0.39 -1.7
420,304 - GFF3531 0.39 -1.1
420,304 - GFF3531 0.39 -1.5
420,363 + GFF3531 0.43 -2.4
420,363 + GFF3531 0.43 -0.4
420,363 + GFF3531 0.43 -2.0
420,363 + GFF3531 0.43 -2.5
420,363 + GFF3531 0.43 -1.4
420,363 + GFF3531 0.43 -1.9
420,364 - GFF3531 0.43 -1.6
420,364 - GFF3531 0.43 +0.5
420,364 - GFF3531 0.43 -1.6
420,364 - GFF3531 0.43 -0.8
420,364 - GFF3531 0.43 -1.4
420,364 - GFF3531 0.43 -2.2
420,364 - GFF3531 0.43 +1.3
420,364 - GFF3531 0.43 -0.6
420,375 + GFF3531 0.44 -2.9
420,375 + GFF3531 0.44 -1.1
420,375 + GFF3531 0.44 -0.8
420,375 + GFF3531 0.44 -0.5
420,375 + GFF3531 0.44 +0.8
420,376 - GFF3531 0.44 -1.6
420,376 - GFF3531 0.44 -1.1
420,376 - GFF3531 0.44 -1.4
420,376 - GFF3531 0.44 -1.4
420,376 - GFF3531 0.44 -1.6
420,376 - GFF3531 0.44 +0.2
420,744 + GFF3531 0.66 -1.4
420,924 + GFF3531 0.77 -1.2
420,924 + GFF3531 0.77 -0.1
420,925 - GFF3531 0.77 -1.1
420,925 - GFF3531 0.77 -1.3
421,224 + -1.6
421,224 + -1.5
421,225 - -1.0
421,225 - -1.3
421,233 + -1.4
421,233 + -2.2
421,308 + -0.6
421,308 + -0.3
421,309 - +0.4
421,309 - -0.1
421,529 + GFF3532 0.17 +0.8
421,529 + GFF3532 0.17 +0.1
421,529 + GFF3532 0.17 -0.1
421,530 - GFF3532 0.18 +0.5
421,530 - GFF3532 0.18 -0.7
421,530 - GFF3532 0.18 +1.8
421,530 - GFF3532 0.18 -1.2
422,015 + -1.2
422,015 + -0.1
422,016 - +0.3
422,016 - -0.5
422,026 + -0.4
422,026 + +0.4
422,026 + +0.8
422,026 + +0.1
422,026 + +0.3
422,040 + -0.5

Or see this region's nucleotide sequence