Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3527 and GFF3528 are separated by 37 nucleotides GFF3528 and GFF3529 overlap by 12 nucleotides
GFF3527 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 411,601 to 413,826
GFF3527
GFF3528 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 413,864 to 416,452
GFF3528
GFF3529 - possible endonuclease/exonuclease/phosphatase family protein, at 416,441 to 417,448
GFF3529
Position (kb) 413
414
415
416
417 Strain fitness (log2 ratio) -1
0
1
2
3 at 413.311 kb on + strand, within GFF3527 at 413.311 kb on + strand, within GFF3527 at 413.312 kb on - strand, within GFF3527 at 413.515 kb on + strand, within GFF3527 at 413.516 kb on - strand, within GFF3527 at 413.858 kb on + strand at 413.858 kb on + strand at 413.858 kb on + strand at 413.858 kb on + strand at 413.859 kb on - strand at 413.859 kb on - strand at 413.859 kb on - strand at 413.859 kb on - strand at 414.174 kb on - strand, within GFF3528 at 414.716 kb on + strand, within GFF3528 at 414.717 kb on - strand, within GFF3528 at 414.717 kb on - strand, within GFF3528 at 414.717 kb on - strand, within GFF3528 at 414.717 kb on - strand, within GFF3528 at 415.206 kb on - strand, within GFF3528 at 415.206 kb on - strand, within GFF3528 at 415.388 kb on + strand, within GFF3528 at 415.388 kb on + strand, within GFF3528 at 415.587 kb on - strand, within GFF3528 at 415.587 kb on - strand, within GFF3528 at 415.587 kb on - strand, within GFF3528 at 415.587 kb on - strand, within GFF3528 at 415.587 kb on - strand, within GFF3528 at 415.587 kb on - strand, within GFF3528 at 415.587 kb on - strand, within GFF3528 at 415.587 kb on - strand, within GFF3528 at 415.587 kb on - strand, within GFF3528 at 417.240 kb on + strand, within GFF3529 at 417.241 kb on - strand, within GFF3529 at 417.378 kb on + strand at 417.396 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 413,311 + GFF3527 0.77 +0.6 413,311 + GFF3527 0.77 +0.4 413,312 - GFF3527 0.77 -0.0 413,515 + GFF3527 0.86 -1.1 413,516 - GFF3527 0.86 +0.8 413,858 + -0.4 413,858 + +0.2 413,858 + +0.1 413,858 + -0.5 413,859 - -0.2 413,859 - -0.1 413,859 - +0.1 413,859 - +0.5 414,174 - GFF3528 0.12 -0.0 414,716 + GFF3528 0.33 +1.0 414,717 - GFF3528 0.33 -0.1 414,717 - GFF3528 0.33 +0.1 414,717 - GFF3528 0.33 -0.6 414,717 - GFF3528 0.33 +0.2 415,206 - GFF3528 0.52 +0.2 415,206 - GFF3528 0.52 +2.8 415,388 + GFF3528 0.59 +0.3 415,388 + GFF3528 0.59 -0.1 415,587 - GFF3528 0.67 +0.6 415,587 - GFF3528 0.67 +0.1 415,587 - GFF3528 0.67 -0.4 415,587 - GFF3528 0.67 +0.1 415,587 - GFF3528 0.67 +0.2 415,587 - GFF3528 0.67 +0.1 415,587 - GFF3528 0.67 +0.5 415,587 - GFF3528 0.67 +0.1 415,587 - GFF3528 0.67 -0.1 417,240 + GFF3529 0.79 -0.1 417,241 - GFF3529 0.79 +0.0 417,378 + +2.3 417,396 + +0.8
Or see this region's nucleotide sequence