Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF348 and GFF349 are separated by 17 nucleotides GFF349 and GFF350 are separated by 16 nucleotides
GFF348 - Signal transduction histidine kinase, at 11,182 to 12,513
GFF348
GFF349 - Hydrogenase transcriptional regulatory protein HoxA, at 12,531 to 13,691
GFF349
GFF350 - FOG: CheY-like receiver, at 13,708 to 14,670
GFF350
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1 at 11.531 kb on - strand, within GFF348 at 11.602 kb on + strand, within GFF348 at 11.602 kb on + strand, within GFF348 at 11.602 kb on + strand, within GFF348 at 11.602 kb on + strand, within GFF348 at 11.899 kb on + strand, within GFF348 at 11.900 kb on - strand, within GFF348 at 11.900 kb on - strand, within GFF348 at 12.115 kb on + strand, within GFF348 at 12.115 kb on + strand, within GFF348 at 12.115 kb on + strand, within GFF348 at 12.418 kb on + strand at 12.419 kb on - strand at 12.420 kb on - strand at 12.612 kb on + strand at 12.613 kb on - strand at 12.613 kb on - strand at 12.711 kb on + strand, within GFF349 at 12.712 kb on - strand, within GFF349 at 12.712 kb on - strand, within GFF349 at 13.029 kb on + strand, within GFF349 at 13.030 kb on - strand, within GFF349 at 13.350 kb on + strand, within GFF349 at 13.671 kb on + strand at 13.672 kb on - strand at 13.759 kb on + strand at 13.759 kb on + strand at 13.760 kb on - strand at 13.841 kb on - strand, within GFF350 at 13.892 kb on - strand, within GFF350 at 13.924 kb on + strand, within GFF350 at 13.925 kb on - strand, within GFF350 at 13.925 kb on - strand, within GFF350 at 14.009 kb on - strand, within GFF350 at 14.009 kb on - strand, within GFF350 at 14.014 kb on + strand, within GFF350 at 14.014 kb on + strand, within GFF350 at 14.014 kb on + strand, within GFF350 at 14.015 kb on - strand, within GFF350
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 11,531 - GFF348 0.26 -0.5 11,602 + GFF348 0.32 -0.3 11,602 + GFF348 0.32 -0.2 11,602 + GFF348 0.32 -0.2 11,602 + GFF348 0.32 +1.4 11,899 + GFF348 0.54 -1.5 11,900 - GFF348 0.54 -0.3 11,900 - GFF348 0.54 -0.0 12,115 + GFF348 0.70 +0.0 12,115 + GFF348 0.70 -0.2 12,115 + GFF348 0.70 -0.1 12,418 + +0.1 12,419 - -0.4 12,420 - -0.0 12,612 + -1.1 12,613 - -0.2 12,613 - -1.2 12,711 + GFF349 0.16 -1.0 12,712 - GFF349 0.16 +1.2 12,712 - GFF349 0.16 -1.0 13,029 + GFF349 0.43 -0.7 13,030 - GFF349 0.43 +0.2 13,350 + GFF349 0.71 -1.0 13,671 + +0.3 13,672 - -0.5 13,759 + +0.1 13,759 + +0.5 13,760 - -0.2 13,841 - GFF350 0.14 -0.5 13,892 - GFF350 0.19 +0.8 13,924 + GFF350 0.22 +0.6 13,925 - GFF350 0.23 -0.5 13,925 - GFF350 0.23 -0.3 14,009 - GFF350 0.31 -0.4 14,009 - GFF350 0.31 -0.4 14,014 + GFF350 0.32 +0.6 14,014 + GFF350 0.32 +0.4 14,014 + GFF350 0.32 -0.1 14,015 - GFF350 0.32 -0.3
Or see this region's nucleotide sequence