Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3469 and GFF3470 overlap by 4 nucleotides GFF3470 and GFF3471 are separated by 27 nucleotides
GFF3469 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 349,859 to 350,929
GFF3469
GFF3470 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 350,926 to 352,593
GFF3470
GFF3471 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 352,621 to 353,802
GFF3471
Position (kb) 350
351
352
353 Strain fitness (log2 ratio) -1
0
1 at 350.217 kb on - strand, within GFF3469 at 350.282 kb on + strand, within GFF3469 at 350.282 kb on + strand, within GFF3469 at 350.283 kb on - strand, within GFF3469 at 350.283 kb on - strand, within GFF3469 at 350.283 kb on - strand, within GFF3469 at 350.455 kb on - strand, within GFF3469 at 350.555 kb on + strand, within GFF3469 at 350.564 kb on + strand, within GFF3469 at 350.564 kb on + strand, within GFF3469 at 350.565 kb on - strand, within GFF3469 at 350.605 kb on - strand, within GFF3469 at 350.840 kb on + strand at 350.841 kb on - strand at 350.935 kb on - strand at 350.994 kb on + strand at 351.082 kb on + strand at 351.083 kb on - strand at 351.167 kb on + strand, within GFF3470 at 351.167 kb on + strand, within GFF3470 at 351.299 kb on - strand, within GFF3470 at 351.299 kb on - strand, within GFF3470 at 351.569 kb on - strand, within GFF3470 at 351.666 kb on - strand, within GFF3470 at 351.771 kb on + strand, within GFF3470 at 351.909 kb on - strand, within GFF3470 at 352.269 kb on + strand, within GFF3470 at 352.269 kb on + strand, within GFF3470 at 352.449 kb on - strand at 352.839 kb on - strand, within GFF3471 at 352.949 kb on - strand, within GFF3471 at 353.063 kb on - strand, within GFF3471
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 350,217 - GFF3469 0.33 +0.2 350,282 + GFF3469 0.39 +1.7 350,282 + GFF3469 0.39 +0.2 350,283 - GFF3469 0.40 +0.6 350,283 - GFF3469 0.40 +0.4 350,283 - GFF3469 0.40 -0.2 350,455 - GFF3469 0.56 +0.9 350,555 + GFF3469 0.65 -0.2 350,564 + GFF3469 0.66 +0.9 350,564 + GFF3469 0.66 -0.1 350,565 - GFF3469 0.66 -0.9 350,605 - GFF3469 0.70 +1.5 350,840 + -0.1 350,841 - +0.1 350,935 - +1.1 350,994 + -0.8 351,082 + +0.7 351,083 - +0.1 351,167 + GFF3470 0.14 +0.2 351,167 + GFF3470 0.14 -0.8 351,299 - GFF3470 0.22 -0.9 351,299 - GFF3470 0.22 +0.0 351,569 - GFF3470 0.39 +1.4 351,666 - GFF3470 0.44 -0.4 351,771 + GFF3470 0.51 -0.4 351,909 - GFF3470 0.59 -0.7 352,269 + GFF3470 0.81 +1.0 352,269 + GFF3470 0.81 +0.2 352,449 - +0.1 352,839 - GFF3471 0.18 +0.8 352,949 - GFF3471 0.28 -0.2 353,063 - GFF3471 0.37 +0.1
Or see this region's nucleotide sequence