Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3355

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
238,017	+				+0.9
238,017	+				+0.3
238,287	+		GFF3354	0.33	-0.9
238,290	+		GFF3354	0.34	-3.5
238,290	+		GFF3354	0.34	-5.7
238,290	+		GFF3354	0.34	-5.2
238,291	-		GFF3354	0.34	-3.5
238,291	-		GFF3354	0.34	-1.6
238,296	+		GFF3354	0.35	-2.1
238,296	+		GFF3354	0.35	-0.9
238,297	-		GFF3354	0.35	-5.8
238,500	+		GFF3354	0.60	-3.7
238,501	-		GFF3354	0.60	-4.4
238,501	-		GFF3354	0.60	-5.2
238,521	+		GFF3354	0.62	-4.2
238,521	+		GFF3354	0.62	-2.7
238,522	-		GFF3354	0.62	-2.1
238,522	-		GFF3354	0.62	-1.3
238,762	-				-5.8
239,327	+		GFF3355	0.40	-0.9
239,519	+		GFF3355	0.55	-3.0
239,519	+		GFF3355	0.55	-1.3
239,520	-		GFF3355	0.55	-2.6
239,637	-		GFF3355	0.64	-3.0
240,044	+				-0.3
240,044	+				-2.3
240,080	+				-0.9
240,081	-				-4.9
240,335	+		GFF3356	0.29	-2.3
240,335	+		GFF3356	0.29	-3.3
240,335	+		GFF3356	0.29	-2.9
240,335	+		GFF3356	0.29	-4.2
240,393	+		GFF3356	0.38	-1.3
240,393	+		GFF3356	0.38	-2.1
240,394	-		GFF3356	0.38	-4.0
240,451	-		GFF3356	0.46	-1.6
240,456	-		GFF3356	0.47	-0.9
240,712	-		GFF3356	0.84	-1.6
240,712	-		GFF3356	0.84	-1.6
240,712	-		GFF3356	0.84	-2.5
240,869	+				-1.3
240,869	+				-0.7
240,869	+				+0.5
240,869	+				+0.3
240,869	+				+0.3
240,887	+				+1.0
241,058	+		GFF3357	0.32	-0.4
241,059	-		GFF3357	0.32	+0.1
241,059	-		GFF3357	0.32	+1.7
241,059	-		GFF3357	0.32	-0.4