Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3324

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3323 and GFF3324 are separated by 4 nucleotidesGFF3324 and GFF3325 overlap by 12 nucleotidesGFF3325 and GFF3326 are separated by 74 nucleotides GFF3323 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 208,784 to 209,815 GFF3323 GFF3324 - Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22), at 209,820 to 211,205 GFF3324 GFF3325 - hypothetical protein, at 211,194 to 211,322 GFF3325 GFF3326 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 211,397 to 212,281 GFF3326 Position (kb) 209 210 211 212Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 208.944 kb on + strand, within GFF3323at 208.944 kb on + strand, within GFF3323at 208.944 kb on + strand, within GFF3323at 208.945 kb on - strand, within GFF3323at 208.945 kb on - strand, within GFF3323at 209.103 kb on + strand, within GFF3323at 209.104 kb on - strand, within GFF3323at 209.104 kb on - strand, within GFF3323at 209.136 kb on + strand, within GFF3323at 209.137 kb on - strand, within GFF3323at 209.148 kb on + strand, within GFF3323at 209.149 kb on - strand, within GFF3323at 209.193 kb on + strand, within GFF3323at 209.193 kb on + strand, within GFF3323at 209.194 kb on - strand, within GFF3323at 209.194 kb on - strand, within GFF3323at 209.194 kb on - strand, within GFF3323at 209.272 kb on - strand, within GFF3323at 209.355 kb on + strand, within GFF3323at 209.356 kb on - strand, within GFF3323at 209.416 kb on - strand, within GFF3323at 209.529 kb on + strand, within GFF3323at 209.529 kb on + strand, within GFF3323at 209.530 kb on - strand, within GFF3323at 209.530 kb on - strand, within GFF3323at 209.530 kb on - strand, within GFF3323at 209.530 kb on - strand, within GFF3323at 209.784 kb on + strandat 209.784 kb on + strandat 209.785 kb on - strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.854 kb on + strandat 209.855 kb on - strandat 209.855 kb on - strandat 209.855 kb on - strandat 209.855 kb on - strandat 209.855 kb on - strandat 209.855 kb on - strandat 209.855 kb on - strandat 209.893 kb on + strandat 209.893 kb on + strandat 209.893 kb on + strandat 209.894 kb on - strandat 209.974 kb on + strand, within GFF3324at 209.974 kb on + strand, within GFF3324at 209.974 kb on + strand, within GFF3324at 209.974 kb on + strand, within GFF3324at 209.974 kb on + strand, within GFF3324at 209.974 kb on + strand, within GFF3324at 209.975 kb on - strand, within GFF3324at 209.975 kb on - strand, within GFF3324at 209.975 kb on - strand, within GFF3324at 209.975 kb on - strand, within GFF3324at 209.975 kb on - strand, within GFF3324at 210.001 kb on + strand, within GFF3324at 210.001 kb on + strand, within GFF3324at 210.001 kb on + strand, within GFF3324at 210.001 kb on + strand, within GFF3324at 210.001 kb on + strand, within GFF3324at 210.001 kb on + strand, within GFF3324at 210.001 kb on + strand, within GFF3324at 210.002 kb on - strand, within GFF3324at 210.002 kb on - strand, within GFF3324at 210.002 kb on - strand, within GFF3324at 210.002 kb on - strand, within GFF3324at 210.002 kb on - strand, within GFF3324at 210.151 kb on + strand, within GFF3324at 210.151 kb on + strand, within GFF3324at 210.152 kb on - strand, within GFF3324at 210.152 kb on - strand, within GFF3324at 210.502 kb on + strand, within GFF3324at 210.502 kb on + strand, within GFF3324at 210.799 kb on + strand, within GFF3324at 210.799 kb on + strand, within GFF3324at 210.799 kb on + strand, within GFF3324at 210.799 kb on + strand, within GFF3324at 210.800 kb on - strand, within GFF3324at 210.800 kb on - strand, within GFF3324at 210.805 kb on + strand, within GFF3324at 210.806 kb on - strand, within GFF3324at 211.321 kb on - strandat 211.321 kb on - strandat 211.321 kb on - strandat 211.321 kb on - strandat 211.415 kb on + strandat 211.416 kb on + strandat 211.416 kb on + strandat 211.416 kb on + strandat 211.416 kb on + strandat 211.416 kb on + strandat 211.417 kb on - strandat 211.511 kb on + strand, within GFF3326at 211.512 kb on - strand, within GFF3326at 211.512 kb on - strand, within GFF3326at 211.529 kb on + strand, within GFF3326at 211.529 kb on + strand, within GFF3326at 211.530 kb on - strand, within GFF3326at 211.608 kb on - strand, within GFF3326at 211.698 kb on - strand, within GFF3326at 211.698 kb on - strand, within GFF3326at 211.698 kb on - strand, within GFF3326at 211.698 kb on - strand, within GFF3326at 211.698 kb on - strand, within GFF3326at 211.859 kb on + strand, within GFF3326at 211.859 kb on + strand, within GFF3326at 211.859 kb on + strand, within GFF3326at 211.859 kb on + strand, within GFF3326at 211.860 kb on - strand, within GFF3326at 211.860 kb on - strand, within GFF3326at 211.860 kb on - strand, within GFF3326at 211.860 kb on - strand, within GFF3326at 211.860 kb on - strand, within GFF3326at 211.980 kb on + strand, within GFF3326at 211.980 kb on + strand, within GFF3326at 211.981 kb on - strand, within GFF3326at 212.033 kb on + strand, within GFF3326at 212.033 kb on + strand, within GFF3326at 212.033 kb on + strand, within GFF3326at 212.033 kb on + strand, within GFF3326at 212.033 kb on + strand, within GFF3326at 212.034 kb on - strand, within GFF3326at 212.034 kb on - strand, within GFF3326at 212.034 kb on - strand, within GFF3326at 212.034 kb on - strand, within GFF3326at 212.114 kb on - strand, within GFF3326at 212.171 kb on + strand, within GFF3326at 212.171 kb on + strand, within GFF3326at 212.172 kb on - strand, within GFF3326

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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208,944 + GFF3323 0.16 +1.0
208,944 + GFF3323 0.16 -0.3
208,944 + GFF3323 0.16 +0.4
208,945 - GFF3323 0.16 +1.2
208,945 - GFF3323 0.16 +1.5
209,103 + GFF3323 0.31 +0.4
209,104 - GFF3323 0.31 +0.5
209,104 - GFF3323 0.31 -0.3
209,136 + GFF3323 0.34 +0.3
209,137 - GFF3323 0.34 +0.8
209,148 + GFF3323 0.35 -0.6
209,149 - GFF3323 0.35 +0.0
209,193 + GFF3323 0.40 -0.1
209,193 + GFF3323 0.40 -0.2
209,194 - GFF3323 0.40 -1.0
209,194 - GFF3323 0.40 +0.6
209,194 - GFF3323 0.40 +0.5
209,272 - GFF3323 0.47 +0.0
209,355 + GFF3323 0.55 +0.1
209,356 - GFF3323 0.55 -0.5
209,416 - GFF3323 0.61 -1.1
209,529 + GFF3323 0.72 -0.0
209,529 + GFF3323 0.72 -0.3
209,530 - GFF3323 0.72 +0.3
209,530 - GFF3323 0.72 -1.4
209,530 - GFF3323 0.72 +1.2
209,530 - GFF3323 0.72 -0.1
209,784 + +0.4
209,784 + +0.2
209,785 - +0.7
209,821 + -0.3
209,821 + +0.0
209,821 + -1.3
209,854 + -1.1
209,855 - -0.6
209,855 - -0.6
209,855 - -1.0
209,855 - -0.6
209,855 - -0.6
209,855 - -1.7
209,855 - -0.3
209,893 + -3.8
209,893 + -1.8
209,893 + -5.9
209,894 - -6.9
209,974 + GFF3324 0.11 -4.0
209,974 + GFF3324 0.11 -5.1
209,974 + GFF3324 0.11 -0.9
209,974 + GFF3324 0.11 -6.6
209,974 + GFF3324 0.11 -4.9
209,974 + GFF3324 0.11 -2.7
209,975 - GFF3324 0.11 -4.6
209,975 - GFF3324 0.11 -6.2
209,975 - GFF3324 0.11 -1.9
209,975 - GFF3324 0.11 -5.0
209,975 - GFF3324 0.11 -3.5
210,001 + GFF3324 0.13 -5.8
210,001 + GFF3324 0.13 -5.0
210,001 + GFF3324 0.13 -3.7
210,001 + GFF3324 0.13 -1.9
210,001 + GFF3324 0.13 -3.5
210,001 + GFF3324 0.13 -4.2
210,001 + GFF3324 0.13 -5.0
210,002 - GFF3324 0.13 -5.9
210,002 - GFF3324 0.13 -2.9
210,002 - GFF3324 0.13 -3.1
210,002 - GFF3324 0.13 -6.3
210,002 - GFF3324 0.13 -1.3
210,151 + GFF3324 0.24 -2.1
210,151 + GFF3324 0.24 -2.6
210,152 - GFF3324 0.24 -3.5
210,152 - GFF3324 0.24 -5.2
210,502 + GFF3324 0.49 -2.7
210,502 + GFF3324 0.49 -3.6
210,799 + GFF3324 0.71 -3.5
210,799 + GFF3324 0.71 -3.3
210,799 + GFF3324 0.71 -7.3
210,799 + GFF3324 0.71 -3.4
210,800 - GFF3324 0.71 -1.3
210,800 - GFF3324 0.71 -5.9
210,805 + GFF3324 0.71 -5.9
210,806 - GFF3324 0.71 -6.1
211,321 - +0.4
211,321 - +0.4
211,321 - +0.9
211,321 - +1.0
211,415 + -3.9
211,416 + -6.1
211,416 + -2.7
211,416 + -2.3
211,416 + -7.0
211,416 + -1.6
211,417 - -3.9
211,511 + GFF3326 0.13 -2.3
211,512 - GFF3326 0.13 -4.1
211,512 - GFF3326 0.13 -1.3
211,529 + GFF3326 0.15 -2.5
211,529 + GFF3326 0.15 -2.3
211,530 - GFF3326 0.15 -4.4
211,608 - GFF3326 0.24 -3.2
211,698 - GFF3326 0.34 -2.1
211,698 - GFF3326 0.34 -4.8
211,698 - GFF3326 0.34 -4.9
211,698 - GFF3326 0.34 -3.4
211,698 - GFF3326 0.34 -5.2
211,859 + GFF3326 0.52 -3.7
211,859 + GFF3326 0.52 -4.9
211,859 + GFF3326 0.52 -3.1
211,859 + GFF3326 0.52 -3.0
211,860 - GFF3326 0.52 -3.7
211,860 - GFF3326 0.52 -4.4
211,860 - GFF3326 0.52 -3.9
211,860 - GFF3326 0.52 -3.9
211,860 - GFF3326 0.52 -5.5
211,980 + GFF3326 0.66 -2.2
211,980 + GFF3326 0.66 -5.5
211,981 - GFF3326 0.66 -2.7
212,033 + GFF3326 0.72 -5.5
212,033 + GFF3326 0.72 -4.6
212,033 + GFF3326 0.72 -4.0
212,033 + GFF3326 0.72 -2.5
212,033 + GFF3326 0.72 -3.9
212,034 - GFF3326 0.72 -2.7
212,034 - GFF3326 0.72 -6.2
212,034 - GFF3326 0.72 -2.7
212,034 - GFF3326 0.72 -2.3
212,114 - GFF3326 0.81 -4.1
212,171 + GFF3326 0.87 -7.2
212,171 + GFF3326 0.87 -1.3
212,172 - GFF3326 0.88 -6.1

Or see this region's nucleotide sequence