Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF327 and GFF328 are separated by 162 nucleotides GFF328 and GFF329 are separated by 19 nucleotides GFF329 and GFF330 are separated by 46 nucleotides
GFF327 - Surface antigen gene, at 347,767 to 349,161
GFF327
GFF328 - Transmembrane regulator protein PrtR, at 349,324 to 350,223
GFF328
GFF329 - RNA polymerase sigma-54 factor RpoN, at 350,243 to 350,746
GFF329
GFF330 - Orf21; putative lipoprotein, at 350,793 to 351,182
GFF330
Position (kb) 349
350
351 Strain fitness (log2 ratio) -1
0
1 at 348.459 kb on + strand, within GFF327 at 348.459 kb on + strand, within GFF327 at 348.460 kb on - strand, within GFF327 at 348.460 kb on - strand, within GFF327 at 348.906 kb on - strand, within GFF327 at 349.131 kb on - strand at 349.430 kb on + strand, within GFF328 at 349.431 kb on - strand, within GFF328 at 349.554 kb on - strand, within GFF328 at 349.554 kb on - strand, within GFF328 at 349.586 kb on + strand, within GFF328 at 349.767 kb on - strand, within GFF328 at 350.218 kb on - strand at 350.238 kb on + strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.241 kb on - strand at 350.374 kb on - strand, within GFF329 at 350.873 kb on - strand, within GFF330 at 350.890 kb on + strand, within GFF330 at 350.932 kb on + strand, within GFF330 at 350.933 kb on - strand, within GFF330 at 350.933 kb on - strand, within GFF330 at 351.043 kb on + strand, within GFF330 at 351.195 kb on + strand at 351.213 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 348,459 + GFF327 0.50 +0.1 348,459 + GFF327 0.50 +1.0 348,460 - GFF327 0.50 -0.3 348,460 - GFF327 0.50 +0.7 348,906 - GFF327 0.82 -0.9 349,131 - +0.0 349,430 + GFF328 0.12 -1.7 349,431 - GFF328 0.12 -1.1 349,554 - GFF328 0.26 -0.6 349,554 - GFF328 0.26 -1.6 349,586 + GFF328 0.29 -1.5 349,767 - GFF328 0.49 -0.9 350,218 - -0.5 350,238 + +0.1 350,239 - +0.1 350,239 - +0.4 350,241 - +0.1 350,374 - GFF329 0.26 -0.1 350,873 - GFF330 0.21 +0.2 350,890 + GFF330 0.25 -0.1 350,932 + GFF330 0.36 -0.5 350,933 - GFF330 0.36 -1.3 350,933 - GFF330 0.36 -0.9 351,043 + GFF330 0.64 -0.5 351,195 + -0.6 351,213 - +0.6
Or see this region's nucleotide sequence