Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3133

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
8,492	-		GFF3131	0.23	-0.9
8,492	-		GFF3131	0.23	+1.5
8,492	-		GFF3131	0.23	+0.5
8,492	-		GFF3131	0.23	+1.2
8,676	+		GFF3131	0.57	-0.0
8,727	+		GFF3131	0.66	+0.4
8,728	-		GFF3131	0.66	+0.1
8,742	+		GFF3131	0.69	-0.1
8,742	+		GFF3131	0.69	+0.2
8,742	+		GFF3131	0.69	+0.2
8,742	+		GFF3131	0.69	+0.0
8,885	-				+0.1
8,885	-				-0.5
8,885	-				-0.5
8,885	-				-0.0
8,915	+				-1.6
8,916	-				-0.2
8,916	-				+0.2
8,916	-				-0.1
8,921	+				+1.6
8,921	+				+0.2
8,921	+				-0.3
8,921	+				+1.0
8,922	-				+0.5
8,922	-				+0.4
8,922	-				+1.0
8,922	-				-0.2
8,926	+				-1.5
8,926	+				-0.1
8,926	+				+0.1
8,927	-				-0.0
8,936	-				+0.1
8,976	+				-0.2
8,977	-				+1.1
8,986	+				-0.2
8,987	-				+1.6
8,989	+				+0.7
8,990	-				+0.1
8,990	-				-0.7
8,990	-				+0.1
8,990	-				+2.3
9,001	+				-0.9
9,001	+				+0.3
9,052	+				-0.6
9,052	+				-0.1
9,052	+				+0.5
9,053	-				+0.3
9,053	-				+0.2
9,053	-				+0.1
9,056	+				-0.3
9,056	+				-0.1
9,057	-				-1.1
9,118	+				-0.3
9,118	+				+0.0
9,487	+				+0.6
9,487	+				+0.2
9,488	-				-0.3
9,488	-				-0.3
9,659	+				-0.5
9,659	+				+0.7
9,659	+				-0.8
9,660	-				+0.2
9,660	-				+0.9
9,660	-				-0.7
9,660	-				-0.3
9,660	-				-0.9
9,759	+				-0.0
9,759	+				+0.1
9,759	+				+0.4
9,759	+				+0.3
9,759	+				+0.3
9,759	+				+0.6
9,760	-				+0.7
9,760	-				-1.0
9,891	-		GFF3133	0.15	-0.1
9,891	-		GFF3133	0.15	+0.7
9,973	+		GFF3133	0.18	-0.3
10,177	-		GFF3133	0.25	-0.7
10,289	-		GFF3133	0.29	-0.1
10,289	-		GFF3133	0.29	+1.6
10,289	-		GFF3133	0.29	+1.1
10,289	-		GFF3133	0.29	-0.8
10,948	+		GFF3133	0.53	-0.3
10,953	+		GFF3133	0.53	+0.4
10,953	+		GFF3133	0.53	-0.2
10,953	+		GFF3133	0.53	-1.2
10,954	-		GFF3133	0.53	+0.4
10,954	-		GFF3133	0.53	+0.2
10,954	-		GFF3133	0.53	+0.0
10,954	-		GFF3133	0.53	-0.5
11,065	+		GFF3133	0.57	+0.1
11,069	+		GFF3133	0.57	+1.3
11,080	+		GFF3133	0.58	+0.1
11,081	-		GFF3133	0.58	+0.7
11,095	+		GFF3133	0.58	+0.4
11,213	-		GFF3133	0.62	-0.3
11,213	-		GFF3133	0.62	-0.3
11,213	-		GFF3133	0.62	-0.1
11,213	-		GFF3133	0.62	-0.3
11,413	-		GFF3133	0.70	+0.1
11,587	+		GFF3133	0.76	-1.6
11,734	+		GFF3133	0.81	-0.5
11,734	+		GFF3133	0.81	+0.1
11,735	-		GFF3133	0.81	-2.5
11,735	-		GFF3133	0.81	+0.7
11,735	-		GFF3133	0.81	-0.1
11,735	-		GFF3133	0.81	-0.1
11,851	+		GFF3133	0.85	-0.2
11,852	-		GFF3133	0.85	+0.7
12,239	-				+0.3
12,244	+				-0.0
12,244	+				-0.2
12,245	-				+0.7
12,245	-				+1.1
12,407	-				+1.2
12,556	+		GFF3134	0.19	+0.2
12,563	-		GFF3134	0.20	+0.3
12,652	+		GFF3134	0.26	+0.1
12,952	+		GFF3134	0.46	+0.9
12,952	+		GFF3134	0.46	+0.5
12,953	-		GFF3134	0.47	-0.6
13,204	+		GFF3134	0.64	+1.4