Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3107

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3106 and GFF3107 overlap by 4 nucleotidesGFF3107 and GFF3108 overlap by 4 nucleotides GFF3106 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 182,468 to 183,967 GFF3106 GFF3107 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 183,964 to 184,554 GFF3107 GFF3108 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 184,551 to 185,618 GFF3108 Position (kb) 183 184 185Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 183.005 kb on + strand, within GFF3106at 183.005 kb on + strand, within GFF3106at 183.006 kb on - strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.033 kb on - strand, within GFF3106at 183.033 kb on - strand, within GFF3106at 183.033 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.153 kb on - strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.263 kb on + strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.587 kb on + strand, within GFF3106at 183.588 kb on - strand, within GFF3106at 183.588 kb on - strand, within GFF3106at 183.755 kb on + strand, within GFF3106at 183.755 kb on + strand, within GFF3106at 183.756 kb on - strand, within GFF3106at 183.756 kb on - strand, within GFF3106at 183.756 kb on - strand, within GFF3106at 183.773 kb on + strand, within GFF3106at 183.773 kb on + strand, within GFF3106at 183.774 kb on - strand, within GFF3106at 183.774 kb on - strand, within GFF3106at 183.782 kb on + strand, within GFF3106at 183.783 kb on - strand, within GFF3106at 183.783 kb on - strand, within GFF3106at 183.845 kb on + strandat 183.845 kb on + strandat 183.845 kb on + strandat 183.846 kb on - strandat 183.997 kb on + strandat 183.997 kb on + strandat 183.997 kb on + strandat 183.997 kb on + strandat 183.998 kb on - strandat 183.998 kb on - strandat 183.998 kb on - strandat 183.998 kb on - strandat 184.027 kb on + strand, within GFF3107at 184.027 kb on + strand, within GFF3107at 184.028 kb on - strand, within GFF3107at 184.559 kb on - strandat 184.782 kb on + strand, within GFF3108at 184.782 kb on + strand, within GFF3108at 184.783 kb on - strand, within GFF3108at 184.783 kb on - strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.815 kb on + strand, within GFF3108at 184.816 kb on - strand, within GFF3108at 184.816 kb on - strand, within GFF3108at 184.816 kb on - strand, within GFF3108at 184.998 kb on + strand, within GFF3108at 184.998 kb on + strand, within GFF3108at 184.999 kb on - strand, within GFF3108at 185.100 kb on + strand, within GFF3108at 185.101 kb on - strand, within GFF3108

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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182,993 + GFF3106 0.35 -5.2
182,993 + GFF3106 0.35 -3.3
182,993 + GFF3106 0.35 -3.5
182,993 + GFF3106 0.35 -4.7
182,993 + GFF3106 0.35 -4.3
182,994 - GFF3106 0.35 -5.8
182,994 - GFF3106 0.35 -3.3
182,994 - GFF3106 0.35 -2.7
182,994 - GFF3106 0.35 -1.8
182,994 - GFF3106 0.35 -2.8
183,005 + GFF3106 0.36 -5.4
183,005 + GFF3106 0.36 -1.6
183,006 - GFF3106 0.36 -4.0
183,032 + GFF3106 0.38 -2.3
183,032 + GFF3106 0.38 -2.4
183,032 + GFF3106 0.38 -3.1
183,032 + GFF3106 0.38 -4.0
183,032 + GFF3106 0.38 -2.7
183,033 - GFF3106 0.38 -1.6
183,033 - GFF3106 0.38 -4.0
183,033 - GFF3106 0.38 -3.3
183,081 - GFF3106 0.41 -3.3
183,081 - GFF3106 0.41 -5.9
183,081 - GFF3106 0.41 -4.7
183,081 - GFF3106 0.41 -2.3
183,081 - GFF3106 0.41 -2.8
183,153 - GFF3106 0.46 -0.3
183,239 + GFF3106 0.51 -3.3
183,239 + GFF3106 0.51 -6.6
183,239 + GFF3106 0.51 -5.0
183,239 + GFF3106 0.51 -1.6
183,239 + GFF3106 0.51 -5.1
183,263 + GFF3106 0.53 -2.8
183,297 - GFF3106 0.55 -4.6
183,297 - GFF3106 0.55 -3.0
183,297 - GFF3106 0.55 -5.5
183,297 - GFF3106 0.55 -2.6
183,297 - GFF3106 0.55 -2.8
183,297 - GFF3106 0.55 -5.3
183,297 - GFF3106 0.55 -5.6
183,302 + GFF3106 0.56 -1.6
183,302 + GFF3106 0.56 -4.8
183,302 + GFF3106 0.56 -3.5
183,302 + GFF3106 0.56 -4.5
183,302 + GFF3106 0.56 -0.8
183,302 + GFF3106 0.56 -4.3
183,302 + GFF3106 0.56 -5.3
183,302 + GFF3106 0.56 -3.8
183,302 + GFF3106 0.56 -6.1
183,302 + GFF3106 0.56 -2.4
183,302 + GFF3106 0.56 -2.3
183,302 + GFF3106 0.56 -4.2
183,302 + GFF3106 0.56 -4.9
183,303 - GFF3106 0.56 -2.3
183,303 - GFF3106 0.56 -5.2
183,303 - GFF3106 0.56 -1.8
183,303 - GFF3106 0.56 -3.1
183,303 - GFF3106 0.56 -3.2
183,303 - GFF3106 0.56 -4.6
183,303 - GFF3106 0.56 -2.1
183,303 - GFF3106 0.56 -5.1
183,303 - GFF3106 0.56 -1.6
183,303 - GFF3106 0.56 -4.5
183,303 - GFF3106 0.56 -3.2
183,303 - GFF3106 0.56 -5.5
183,305 + GFF3106 0.56 -5.1
183,305 + GFF3106 0.56 -3.0
183,305 + GFF3106 0.56 -3.3
183,305 + GFF3106 0.56 -3.1
183,305 + GFF3106 0.56 -3.7
183,305 + GFF3106 0.56 -2.3
183,305 + GFF3106 0.56 -4.8
183,306 - GFF3106 0.56 -1.6
183,306 - GFF3106 0.56 -2.4
183,306 - GFF3106 0.56 -3.4
183,306 - GFF3106 0.56 -3.7
183,306 - GFF3106 0.56 -1.3
183,306 - GFF3106 0.56 -1.3
183,306 - GFF3106 0.56 -2.3
183,587 + GFF3106 0.75 -3.3
183,588 - GFF3106 0.75 -4.6
183,588 - GFF3106 0.75 -1.3
183,755 + GFF3106 0.86 -0.8
183,755 + GFF3106 0.86 -2.7
183,756 - GFF3106 0.86 -3.4
183,756 - GFF3106 0.86 -5.1
183,756 - GFF3106 0.86 -1.8
183,773 + GFF3106 0.87 -3.8
183,773 + GFF3106 0.87 -5.5
183,774 - GFF3106 0.87 -7.2
183,774 - GFF3106 0.87 -4.4
183,782 + GFF3106 0.88 -3.9
183,783 - GFF3106 0.88 -1.6
183,783 - GFF3106 0.88 -5.8
183,845 + -5.1
183,845 + -2.4
183,845 + -6.1
183,846 - -4.0
183,997 + -3.2
183,997 + -3.9
183,997 + -2.1
183,997 + -1.3
183,998 - -2.3
183,998 - -1.8
183,998 - -2.1
183,998 - -7.0
184,027 + GFF3107 0.11 -3.7
184,027 + GFF3107 0.11 -3.8
184,028 - GFF3107 0.11 -4.7
184,559 - -3.0
184,782 + GFF3108 0.22 +1.3
184,782 + GFF3108 0.22 +0.2
184,783 - GFF3108 0.22 +1.4
184,783 - GFF3108 0.22 -0.4
184,809 + GFF3108 0.24 -2.1
184,809 + GFF3108 0.24 -1.6
184,809 + GFF3108 0.24 +0.4
184,809 + GFF3108 0.24 +0.6
184,810 - GFF3108 0.24 +1.1
184,810 - GFF3108 0.24 +0.7
184,810 - GFF3108 0.24 +0.3
184,810 - GFF3108 0.24 -0.0
184,815 + GFF3108 0.25 -2.3
184,816 - GFF3108 0.25 +0.3
184,816 - GFF3108 0.25 -0.3
184,816 - GFF3108 0.25 -0.7
184,998 + GFF3108 0.42 -3.2
184,998 + GFF3108 0.42 -0.5
184,999 - GFF3108 0.42 -0.1
185,100 + GFF3108 0.51 +0.5
185,101 - GFF3108 0.51 +0.3

Or see this region's nucleotide sequence