Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3073 and GFF3074 are separated by 43 nucleotides GFF3074 and GFF3075 overlap by 32 nucleotides GFF3075 and GFF3076 are separated by 71 nucleotides GFF3076 and GFF3077 are separated by 13 nucleotides GFF3077 and GFF3078 are separated by 67 nucleotides GFF3078 and GFF3079 are separated by 56 nucleotides
GFF3073 - Integral membrane protein, at 152,401 to 152,865
GFF3073
GFF3074 - hypothetical protein, at 152,909 to 153,043
GFF3074
GFF3075 - Gfa-like protein, at 153,012 to 153,251
GFF3075
GFF3076 - putative; ORF located using Glimmer/Genemark, at 153,323 to 153,793
GFF3076
GFF3077 - Ferredoxin-dependent glutamate synthase (EC 1.4.7.1), at 153,807 to 155,426
GFF3077
GFF3078 - FIG00581584: hypothetical protein, at 155,494 to 156,303
GFF3078
GFF3079 - Transcriptional regulator, TetR family, at 156,360 to 156,932
GFF3079
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.867 kb on + strand at 152.872 kb on - strand at 152.910 kb on + strand at 152.988 kb on + strand, within GFF3074 at 153.075 kb on + strand, within GFF3075 at 153.075 kb on + strand, within GFF3075 at 153.075 kb on + strand, within GFF3075 at 153.075 kb on + strand, within GFF3075 at 153.076 kb on - strand, within GFF3075 at 153.076 kb on - strand, within GFF3075 at 153.076 kb on - strand, within GFF3075 at 153.076 kb on - strand, within GFF3075 at 153.076 kb on - strand, within GFF3075 at 153.254 kb on + strand at 153.254 kb on + strand at 153.254 kb on + strand at 153.254 kb on + strand at 153.254 kb on + strand at 153.255 kb on - strand at 153.255 kb on - strand at 153.255 kb on - strand at 153.255 kb on - strand at 153.255 kb on - strand at 153.255 kb on - strand at 153.255 kb on - strand at 153.255 kb on - strand at 153.255 kb on - strand at 153.255 kb on - strand at 153.474 kb on - strand, within GFF3076 at 153.474 kb on - strand, within GFF3076 at 153.474 kb on - strand, within GFF3076 at 153.538 kb on + strand, within GFF3076 at 153.539 kb on - strand, within GFF3076 at 153.671 kb on + strand, within GFF3076 at 153.671 kb on + strand, within GFF3076 at 153.672 kb on - strand, within GFF3076 at 153.677 kb on + strand, within GFF3076 at 153.677 kb on + strand, within GFF3076 at 153.677 kb on + strand, within GFF3076 at 153.677 kb on + strand, within GFF3076 at 153.678 kb on - strand, within GFF3076 at 153.678 kb on - strand, within GFF3076 at 153.678 kb on - strand, within GFF3076 at 153.791 kb on + strand at 153.848 kb on - strand at 154.775 kb on - strand, within GFF3077 at 154.954 kb on + strand, within GFF3077 at 154.954 kb on + strand, within GFF3077 at 155.113 kb on + strand, within GFF3077 at 155.173 kb on + strand, within GFF3077 at 155.173 kb on + strand, within GFF3077 at 155.174 kb on - strand, within GFF3077 at 155.389 kb on + strand at 155.390 kb on - strand at 155.390 kb on - strand at 155.390 kb on - strand at 155.402 kb on - strand at 155.402 kb on - strand at 155.454 kb on + strand at 155.454 kb on + strand at 155.454 kb on + strand at 155.454 kb on + strand at 155.455 kb on - strand at 155.455 kb on - strand at 155.471 kb on + strand at 155.471 kb on + strand at 155.471 kb on + strand at 155.471 kb on + strand at 155.471 kb on + strand at 155.472 kb on - strand at 155.548 kb on + strand at 155.549 kb on - strand at 155.549 kb on - strand at 155.549 kb on - strand at 155.549 kb on - strand at 155.549 kb on - strand at 155.549 kb on - strand at 155.549 kb on - strand at 155.755 kb on + strand, within GFF3078 at 155.756 kb on - strand, within GFF3078 at 155.756 kb on - strand, within GFF3078 at 155.756 kb on - strand, within GFF3078 at 155.848 kb on + strand, within GFF3078 at 155.848 kb on + strand, within GFF3078 at 155.848 kb on + strand, within GFF3078 at 155.848 kb on + strand, within GFF3078 at 155.849 kb on - strand, within GFF3078 at 156.172 kb on + strand, within GFF3078 at 156.172 kb on + strand, within GFF3078 at 156.172 kb on + strand, within GFF3078 at 156.172 kb on + strand, within GFF3078 at 156.173 kb on - strand, within GFF3078 at 156.280 kb on + strand at 156.280 kb on + strand at 156.281 kb on - strand at 156.281 kb on - strand at 156.333 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 152,867 + -0.1 152,872 - -0.3 152,910 + +0.7 152,988 + GFF3074 0.59 +0.1 153,075 + GFF3075 0.26 -0.8 153,075 + GFF3075 0.26 +1.2 153,075 + GFF3075 0.26 -0.3 153,075 + GFF3075 0.26 -0.1 153,076 - GFF3075 0.27 -0.2 153,076 - GFF3075 0.27 -0.3 153,076 - GFF3075 0.27 +0.3 153,076 - GFF3075 0.27 -0.1 153,076 - GFF3075 0.27 -0.0 153,254 + +1.5 153,254 + -0.9 153,254 + +2.1 153,254 + -0.1 153,254 + +0.8 153,255 - -0.6 153,255 - -0.1 153,255 - -0.3 153,255 - +0.2 153,255 - +0.0 153,255 - -0.4 153,255 - +0.6 153,255 - -0.3 153,255 - +0.2 153,255 - +0.1 153,474 - GFF3076 0.32 +0.6 153,474 - GFF3076 0.32 +0.2 153,474 - GFF3076 0.32 -0.1 153,538 + GFF3076 0.46 -0.3 153,539 - GFF3076 0.46 -0.9 153,671 + GFF3076 0.74 -0.1 153,671 + GFF3076 0.74 +0.3 153,672 - GFF3076 0.74 -0.1 153,677 + GFF3076 0.75 -0.1 153,677 + GFF3076 0.75 +1.2 153,677 + GFF3076 0.75 +0.7 153,677 + GFF3076 0.75 +0.2 153,678 - GFF3076 0.75 -0.1 153,678 - GFF3076 0.75 +0.2 153,678 - GFF3076 0.75 -2.6 153,791 + +1.3 153,848 - +0.2 154,775 - GFF3077 0.60 +0.1 154,954 + GFF3077 0.71 -0.8 154,954 + GFF3077 0.71 +0.4 155,113 + GFF3077 0.81 +1.3 155,173 + GFF3077 0.84 -0.2 155,173 + GFF3077 0.84 -0.3 155,174 - GFF3077 0.84 +0.2 155,389 + +0.4 155,390 - -0.2 155,390 - +0.1 155,390 - -0.3 155,402 - +1.4 155,402 - +0.1 155,454 + -0.5 155,454 + -0.2 155,454 + +1.0 155,454 + -0.4 155,455 - -1.0 155,455 - +0.5 155,471 + -1.1 155,471 + -0.0 155,471 + +0.3 155,471 + -1.1 155,471 + -0.4 155,472 - +0.1 155,548 + +0.3 155,549 - +0.9 155,549 - -0.3 155,549 - +0.0 155,549 - +0.4 155,549 - -1.6 155,549 - -0.7 155,549 - -1.0 155,755 + GFF3078 0.32 -0.3 155,756 - GFF3078 0.32 -0.4 155,756 - GFF3078 0.32 -0.3 155,756 - GFF3078 0.32 +0.6 155,848 + GFF3078 0.44 -0.6 155,848 + GFF3078 0.44 +0.2 155,848 + GFF3078 0.44 -0.1 155,848 + GFF3078 0.44 -1.3 155,849 - GFF3078 0.44 -0.1 156,172 + GFF3078 0.84 -0.1 156,172 + GFF3078 0.84 -0.3 156,172 + GFF3078 0.84 -0.7 156,172 + GFF3078 0.84 -1.3 156,173 - GFF3078 0.84 -0.5 156,280 + -0.1 156,280 + +0.0 156,281 - +0.1 156,281 - -0.7 156,333 + -1.1
Or see this region's nucleotide sequence