Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3040

Experiment: Ying_sugar7 rep A; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3039 and GFF3040 are separated by 6 nucleotidesGFF3040 and GFF3041 are separated by 348 nucleotides GFF3039 - hypothetical protein, at 115,563 to 119,090 GFF3039 GFF3040 - Malate synthase G (EC 2.3.3.9), at 119,097 to 121,307 GFF3040 GFF3041 - Outer membrane protein (porin), at 121,656 to 122,759 GFF3041 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 118.398 kb on + strand, within GFF3039at 118.398 kb on + strand, within GFF3039at 118.398 kb on + strand, within GFF3039at 118.398 kb on + strand, within GFF3039at 118.398 kb on + strand, within GFF3039at 118.398 kb on + strand, within GFF3039at 118.401 kb on + strand, within GFF3039at 118.401 kb on + strand, within GFF3039at 118.401 kb on + strand, within GFF3039at 118.401 kb on + strand, within GFF3039at 118.401 kb on + strand, within GFF3039at 118.401 kb on + strand, within GFF3039at 118.401 kb on + strand, within GFF3039at 118.401 kb on + strand, within GFF3039at 118.401 kb on + strand, within GFF3039at 118.402 kb on - strand, within GFF3039at 118.402 kb on - strand, within GFF3039at 118.476 kb on + strand, within GFF3039at 118.476 kb on + strand, within GFF3039at 118.476 kb on + strand, within GFF3039at 118.476 kb on + strand, within GFF3039at 118.476 kb on + strand, within GFF3039at 118.477 kb on - strand, within GFF3039at 118.477 kb on - strand, within GFF3039at 118.490 kb on + strand, within GFF3039at 118.533 kb on + strand, within GFF3039at 118.533 kb on + strand, within GFF3039at 118.533 kb on + strand, within GFF3039at 118.534 kb on - strand, within GFF3039at 118.534 kb on - strand, within GFF3039at 118.534 kb on - strand, within GFF3039at 118.534 kb on - strand, within GFF3039at 118.534 kb on - strand, within GFF3039at 118.534 kb on - strand, within GFF3039at 118.790 kb on + strandat 118.790 kb on + strandat 118.790 kb on + strandat 118.790 kb on + strandat 118.790 kb on + strandat 118.790 kb on + strandat 118.791 kb on + strandat 118.791 kb on - strandat 118.791 kb on - strandat 118.791 kb on - strandat 118.791 kb on - strandat 118.871 kb on - strandat 118.943 kb on + strandat 118.943 kb on + strandat 118.943 kb on + strandat 118.944 kb on - strandat 118.944 kb on - strandat 118.944 kb on - strandat 118.944 kb on - strandat 119.088 kb on + strandat 119.088 kb on + strandat 119.088 kb on + strandat 119.089 kb on - strandat 119.146 kb on + strandat 119.146 kb on + strandat 119.237 kb on - strandat 119.237 kb on - strandat 119.449 kb on + strand, within GFF3040at 119.449 kb on + strand, within GFF3040at 119.449 kb on + strand, within GFF3040at 119.812 kb on + strand, within GFF3040at 119.812 kb on + strand, within GFF3040at 119.812 kb on + strand, within GFF3040at 119.812 kb on + strand, within GFF3040at 119.812 kb on + strand, within GFF3040at 119.813 kb on - strand, within GFF3040at 119.813 kb on - strand, within GFF3040at 120.106 kb on + strand, within GFF3040at 120.107 kb on - strand, within GFF3040at 120.334 kb on + strand, within GFF3040at 120.335 kb on - strand, within GFF3040at 120.335 kb on - strand, within GFF3040at 120.335 kb on - strand, within GFF3040at 120.335 kb on - strand, within GFF3040at 120.430 kb on + strand, within GFF3040at 120.634 kb on + strand, within GFF3040at 120.788 kb on - strand, within GFF3040at 120.788 kb on - strand, within GFF3040at 120.788 kb on - strand, within GFF3040at 120.821 kb on - strand, within GFF3040at 120.881 kb on - strand, within GFF3040at 120.892 kb on + strand, within GFF3040at 120.931 kb on + strand, within GFF3040at 120.931 kb on + strand, within GFF3040at 121.039 kb on + strand, within GFF3040at 121.361 kb on + strandat 121.361 kb on + strandat 121.361 kb on + strandat 121.362 kb on - strandat 121.362 kb on - strandat 121.372 kb on + strandat 121.372 kb on + strandat 121.372 kb on + strandat 121.372 kb on + strandat 121.373 kb on - strandat 121.373 kb on - strandat 121.394 kb on + strandat 121.395 kb on - strandat 121.435 kb on + strandat 121.435 kb on + strandat 121.436 kb on - strandat 121.471 kb on + strandat 121.472 kb on - strandat 121.472 kb on - strandat 121.472 kb on - strandat 121.511 kb on + strandat 121.512 kb on - strandat 121.560 kb on - strandat 121.694 kb on + strandat 121.694 kb on + strandat 121.695 kb on - strandat 121.695 kb on - strandat 121.695 kb on - strandat 121.699 kb on + strandat 121.699 kb on + strandat 121.699 kb on + strandat 121.699 kb on + strandat 121.699 kb on + strandat 121.699 kb on + strandat 121.700 kb on - strandat 121.700 kb on - strandat 121.791 kb on + strand, within GFF3041at 121.791 kb on + strand, within GFF3041at 121.792 kb on - strand, within GFF3041at 121.792 kb on - strand, within GFF3041at 121.792 kb on - strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.835 kb on + strand, within GFF3041at 121.836 kb on - strand, within GFF3041at 121.836 kb on - strand, within GFF3041at 121.844 kb on + strand, within GFF3041at 121.976 kb on - strand, within GFF3041at 122.070 kb on + strand, within GFF3041at 122.070 kb on + strand, within GFF3041at 122.070 kb on + strand, within GFF3041at 122.071 kb on - strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.257 kb on - strand, within GFF3041at 122.257 kb on - strand, within GFF3041at 122.257 kb on - strand, within GFF3041at 122.257 kb on - strand, within GFF3041

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
remove
118,398 + GFF3039 0.80 +1.3
118,398 + GFF3039 0.80 -0.1
118,398 + GFF3039 0.80 +0.2
118,398 + GFF3039 0.80 +0.4
118,398 + GFF3039 0.80 +0.5
118,398 + GFF3039 0.80 +0.2
118,401 + GFF3039 0.80 +1.0
118,401 + GFF3039 0.80 +1.0
118,401 + GFF3039 0.80 +2.2
118,401 + GFF3039 0.80 +0.7
118,401 + GFF3039 0.80 -0.8
118,401 + GFF3039 0.80 +0.0
118,401 + GFF3039 0.80 +0.2
118,401 + GFF3039 0.80 +0.3
118,401 + GFF3039 0.80 +0.6
118,402 - GFF3039 0.80 +0.4
118,402 - GFF3039 0.80 -0.1
118,476 + GFF3039 0.83 +0.1
118,476 + GFF3039 0.83 +0.4
118,476 + GFF3039 0.83 +0.1
118,476 + GFF3039 0.83 -0.8
118,476 + GFF3039 0.83 -0.2
118,477 - GFF3039 0.83 -0.0
118,477 - GFF3039 0.83 +0.0
118,490 + GFF3039 0.83 -0.2
118,533 + GFF3039 0.84 -0.8
118,533 + GFF3039 0.84 +0.0
118,533 + GFF3039 0.84 +0.7
118,534 - GFF3039 0.84 -0.1
118,534 - GFF3039 0.84 -0.2
118,534 - GFF3039 0.84 +1.3
118,534 - GFF3039 0.84 -0.8
118,534 - GFF3039 0.84 +0.0
118,534 - GFF3039 0.84 +0.4
118,790 + -0.3
118,790 + +1.0
118,790 + +1.7
118,790 + +0.2
118,790 + +0.6
118,790 + -0.5
118,791 + -0.7
118,791 - +0.3
118,791 - -0.5
118,791 - +0.5
118,791 - +2.0
118,871 - -0.1
118,943 + +1.0
118,943 + +1.6
118,943 + +0.3
118,944 - -0.3
118,944 - -0.3
118,944 - -0.8
118,944 - +0.2
119,088 + +0.3
119,088 + -0.8
119,088 + +0.1
119,089 - -0.2
119,146 + -5.8
119,146 + -3.1
119,237 - -1.8
119,237 - -1.8
119,449 + GFF3040 0.16 -2.7
119,449 + GFF3040 0.16 -1.3
119,449 + GFF3040 0.16 -4.4
119,812 + GFF3040 0.32 -4.4
119,812 + GFF3040 0.32 -1.3
119,812 + GFF3040 0.32 -7.2
119,812 + GFF3040 0.32 -2.6
119,812 + GFF3040 0.32 -2.7
119,813 - GFF3040 0.32 -4.2
119,813 - GFF3040 0.32 -3.0
120,106 + GFF3040 0.46 +0.7
120,107 - GFF3040 0.46 -3.7
120,334 + GFF3040 0.56 -3.1
120,335 - GFF3040 0.56 -1.3
120,335 - GFF3040 0.56 -2.6
120,335 - GFF3040 0.56 -4.6
120,335 - GFF3040 0.56 -2.1
120,430 + GFF3040 0.60 -2.1
120,634 + GFF3040 0.70 -3.3
120,788 - GFF3040 0.76 -3.7
120,788 - GFF3040 0.76 -3.3
120,788 - GFF3040 0.76 -1.3
120,821 - GFF3040 0.78 -1.6
120,881 - GFF3040 0.81 -2.1
120,892 + GFF3040 0.81 -0.3
120,931 + GFF3040 0.83 -5.8
120,931 + GFF3040 0.83 -3.3
121,039 + GFF3040 0.88 -1.8
121,361 + -2.6
121,361 + -1.6
121,361 + -1.8
121,362 - +0.1
121,362 - -0.0
121,372 + +0.0
121,372 + -0.6
121,372 + -0.4
121,372 + +0.1
121,373 - +0.5
121,373 - -0.0
121,394 + -0.2
121,395 - -0.7
121,435 + -0.4
121,435 + +1.7
121,436 - -0.4
121,471 + +0.3
121,472 - +0.1
121,472 - -0.1
121,472 - +1.3
121,511 + -0.2
121,512 - +0.1
121,560 - -0.5
121,694 + +0.7
121,694 + +0.3
121,695 - -2.3
121,695 - -0.2
121,695 - -0.4
121,699 + +0.6
121,699 + +0.0
121,699 + -0.2
121,699 + +0.0
121,699 + -0.0
121,699 + -0.0
121,700 - +0.3
121,700 - -0.2
121,791 + GFF3041 0.12 +0.6
121,791 + GFF3041 0.12 +0.3
121,792 - GFF3041 0.12 -0.7
121,792 - GFF3041 0.12 -0.8
121,792 - GFF3041 0.12 -0.0
121,809 + GFF3041 0.14 -0.3
121,809 + GFF3041 0.14 +0.4
121,809 + GFF3041 0.14 +1.0
121,809 + GFF3041 0.14 +1.3
121,809 + GFF3041 0.14 +1.2
121,809 + GFF3041 0.14 +1.7
121,809 + GFF3041 0.14 +0.8
121,809 + GFF3041 0.14 +0.3
121,809 + GFF3041 0.14 -0.2
121,809 + GFF3041 0.14 +0.4
121,809 + GFF3041 0.14 +1.3
121,809 + GFF3041 0.14 +0.4
121,809 + GFF3041 0.14 -0.7
121,809 + GFF3041 0.14 +1.0
121,809 + GFF3041 0.14 +0.6
121,809 + GFF3041 0.14 -0.2
121,809 + GFF3041 0.14 +0.2
121,809 + GFF3041 0.14 +0.5
121,809 + GFF3041 0.14 -0.3
121,810 - GFF3041 0.14 -0.7
121,810 - GFF3041 0.14 -0.2
121,810 - GFF3041 0.14 +0.5
121,810 - GFF3041 0.14 -0.1
121,810 - GFF3041 0.14 +0.0
121,810 - GFF3041 0.14 +1.6
121,810 - GFF3041 0.14 -0.2
121,810 - GFF3041 0.14 -0.4
121,835 + GFF3041 0.16 -1.3
121,836 - GFF3041 0.16 -1.1
121,836 - GFF3041 0.16 +1.0
121,844 + GFF3041 0.17 +0.2
121,976 - GFF3041 0.29 +0.3
122,070 + GFF3041 0.38 -0.0
122,070 + GFF3041 0.38 -0.1
122,070 + GFF3041 0.38 +1.0
122,071 - GFF3041 0.38 -1.4
122,214 + GFF3041 0.51 +0.1
122,214 + GFF3041 0.51 -1.1
122,214 + GFF3041 0.51 -0.3
122,214 + GFF3041 0.51 -0.0
122,214 + GFF3041 0.51 -0.5
122,214 + GFF3041 0.51 +0.1
122,256 + GFF3041 0.54 -0.8
122,256 + GFF3041 0.54 +0.1
122,256 + GFF3041 0.54 -0.0
122,256 + GFF3041 0.54 +0.6
122,256 + GFF3041 0.54 +0.1
122,256 + GFF3041 0.54 -0.0
122,256 + GFF3041 0.54 -0.1
122,257 - GFF3041 0.54 +0.1
122,257 - GFF3041 0.54 +0.3
122,257 - GFF3041 0.54 +0.4
122,257 - GFF3041 0.54 +0.1

Or see this region's nucleotide sequence