Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2921 and GFF2922 are separated by 150 nucleotides GFF2922 and GFF2923 are separated by 65 nucleotides GFF2923 and GFF2924 are separated by 73 nucleotides GFF2924 and GFF2925 are separated by 27 nucleotides
GFF2921 - Cytochrome b, at 6,819 to 7,487
GFF2921
GFF2922 - putative c'cytochrome, at 7,638 to 8,087
GFF2922
GFF2923 - Cytochrome c-type biogenesis protein ResA, at 8,153 to 8,680
GFF2923
GFF2924 - FIG00933091: hypothetical protein, at 8,754 to 9,458
GFF2924
GFF2925 - hypothetical protein, at 9,486 to 9,917
GFF2925
Position (kb) 8
9 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.252 kb on + strand, within GFF2921 at 7.253 kb on - strand, within GFF2921 at 7.253 kb on - strand, within GFF2921 at 7.253 kb on - strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.358 kb on - strand, within GFF2921 at 7.358 kb on - strand, within GFF2921 at 7.523 kb on + strand at 7.523 kb on + strand at 7.523 kb on + strand at 7.524 kb on - strand at 7.524 kb on - strand at 7.524 kb on - strand at 7.531 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.534 kb on + strand at 7.534 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.608 kb on + strand at 7.608 kb on + strand at 7.645 kb on + strand at 7.646 kb on - strand at 7.734 kb on + strand, within GFF2922 at 7.735 kb on - strand, within GFF2922 at 8.085 kb on + strand at 8.085 kb on + strand at 8.085 kb on + strand at 8.085 kb on + strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.256 kb on + strand, within GFF2923 at 8.256 kb on + strand, within GFF2923 at 8.256 kb on + strand, within GFF2923 at 8.257 kb on - strand, within GFF2923 at 8.257 kb on - strand, within GFF2923 at 8.379 kb on + strand, within GFF2923 at 8.379 kb on + strand, within GFF2923 at 8.380 kb on - strand, within GFF2923 at 8.380 kb on - strand, within GFF2923 at 8.421 kb on + strand, within GFF2923 at 8.421 kb on + strand, within GFF2923 at 8.421 kb on + strand, within GFF2923 at 8.421 kb on + strand, within GFF2923 at 8.421 kb on + strand, within GFF2923 at 8.422 kb on - strand, within GFF2923 at 8.431 kb on - strand, within GFF2923 at 8.431 kb on - strand, within GFF2923 at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 9.264 kb on + strand, within GFF2924 at 9.264 kb on + strand, within GFF2924 at 9.264 kb on + strand, within GFF2924 at 9.264 kb on + strand, within GFF2924 at 9.264 kb on + strand, within GFF2924 at 9.264 kb on + strand, within GFF2924 at 9.264 kb on + strand, within GFF2924 at 9.265 kb on - strand, within GFF2924 at 9.265 kb on - strand, within GFF2924 at 9.265 kb on - strand, within GFF2924 at 9.265 kb on - strand, within GFF2924 at 9.265 kb on - strand, within GFF2924 at 9.265 kb on - strand, within GFF2924 at 9.333 kb on + strand, within GFF2924 at 9.333 kb on + strand, within GFF2924 at 9.333 kb on + strand, within GFF2924 at 9.333 kb on + strand, within GFF2924 at 9.333 kb on + strand, within GFF2924 at 9.333 kb on + strand, within GFF2924 at 9.333 kb on + strand, within GFF2924 at 9.334 kb on - strand, within GFF2924 at 9.334 kb on - strand, within GFF2924 at 9.334 kb on - strand, within GFF2924 at 9.334 kb on - strand, within GFF2924 at 9.334 kb on - strand, within GFF2924 at 9.334 kb on - strand, within GFF2924 at 9.363 kb on + strand, within GFF2924 at 9.363 kb on + strand, within GFF2924 at 9.363 kb on + strand, within GFF2924 at 9.363 kb on + strand, within GFF2924 at 9.363 kb on + strand, within GFF2924 at 9.363 kb on + strand, within GFF2924 at 9.364 kb on - strand, within GFF2924 at 9.364 kb on - strand, within GFF2924 at 9.364 kb on - strand, within GFF2924 at 9.364 kb on - strand, within GFF2924 at 9.364 kb on - strand, within GFF2924 at 9.364 kb on - strand, within GFF2924 at 9.364 kb on - strand, within GFF2924 at 9.364 kb on - strand, within GFF2924 at 9.364 kb on - strand, within GFF2924 at 9.456 kb on + strand at 9.456 kb on + strand at 9.456 kb on + strand at 9.457 kb on - strand at 9.488 kb on - strand at 9.529 kb on + strand at 9.529 kb on + strand at 9.530 kb on - strand, within GFF2925 at 9.530 kb on - strand, within GFF2925 at 9.530 kb on - strand, within GFF2925 at 9.538 kb on + strand, within GFF2925 at 9.539 kb on - strand, within GFF2925
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 7,179 + GFF2921 0.54 -0.0 7,179 + GFF2921 0.54 -0.2 7,179 + GFF2921 0.54 +0.0 7,179 + GFF2921 0.54 +0.1 7,179 + GFF2921 0.54 +0.5 7,180 - GFF2921 0.54 +0.0 7,180 - GFF2921 0.54 +0.0 7,180 - GFF2921 0.54 +1.7 7,180 - GFF2921 0.54 -0.1 7,180 - GFF2921 0.54 +0.0 7,180 - GFF2921 0.54 +0.6 7,180 - GFF2921 0.54 -0.0 7,252 + GFF2921 0.65 +0.1 7,253 - GFF2921 0.65 -0.6 7,253 - GFF2921 0.65 +0.3 7,253 - GFF2921 0.65 -0.3 7,276 + GFF2921 0.68 -0.5 7,276 + GFF2921 0.68 -0.3 7,276 + GFF2921 0.68 -1.8 7,276 + GFF2921 0.68 +1.0 7,276 + GFF2921 0.68 +0.4 7,276 + GFF2921 0.68 +0.7 7,276 + GFF2921 0.68 +0.1 7,276 + GFF2921 0.68 -0.1 7,276 + GFF2921 0.68 -0.4 7,276 + GFF2921 0.68 -0.2 7,277 - GFF2921 0.68 -0.3 7,277 - GFF2921 0.68 -1.1 7,277 - GFF2921 0.68 +0.7 7,277 - GFF2921 0.68 -0.5 7,277 - GFF2921 0.68 +0.3 7,277 - GFF2921 0.68 -0.7 7,277 - GFF2921 0.68 +0.7 7,277 - GFF2921 0.68 -0.7 7,277 - GFF2921 0.68 +0.1 7,358 - GFF2921 0.81 -0.0 7,358 - GFF2921 0.81 -0.1 7,523 + +0.4 7,523 + +1.1 7,523 + -0.1 7,524 - +0.5 7,524 - -0.3 7,524 - -0.3 7,531 + -0.5 7,532 + +0.6 7,532 + +0.4 7,532 + +0.1 7,532 + +0.6 7,532 + -0.2 7,532 + -0.6 7,532 + -0.4 7,532 + +1.2 7,532 + -0.6 7,532 + -0.5 7,532 + -1.1 7,532 + -0.4 7,532 + +0.2 7,532 + +0.5 7,532 + +0.4 7,532 + -1.6 7,532 + -0.5 7,533 - -0.3 7,533 - +0.1 7,533 - -0.5 7,533 - -0.3 7,533 - +0.9 7,533 - +0.4 7,533 - -0.3 7,533 - -0.7 7,533 - -0.1 7,533 - +0.7 7,533 - -1.4 7,533 - +0.3 7,533 - -0.3 7,533 - -0.0 7,533 - -0.7 7,533 - -0.1 7,533 - +0.9 7,534 + -0.3 7,534 + -0.2 7,572 + -1.3 7,572 + -0.7 7,572 + -0.6 7,572 + -0.6 7,572 + +0.9 7,572 + -0.1 7,572 + -0.3 7,572 + +0.1 7,573 - -0.1 7,573 - +0.3 7,573 - -1.4 7,573 - +0.2 7,573 - -0.1 7,573 - -0.0 7,573 - +0.5 7,573 - +0.7 7,573 - -0.4 7,573 - -0.2 7,573 - +0.2 7,608 + +2.1 7,608 + +0.9 7,645 + +1.2 7,646 - +0.4 7,734 + GFF2922 0.21 +0.7 7,735 - GFF2922 0.22 -0.9 8,085 + -0.8 8,085 + +1.2 8,085 + -0.2 8,085 + +0.5 8,086 - -0.6 8,086 - +0.9 8,086 - +0.0 8,086 - +0.7 8,086 - +1.0 8,086 - +0.2 8,086 - +0.4 8,086 - -0.3 8,256 + GFF2923 0.20 -2.7 8,256 + GFF2923 0.20 -2.1 8,256 + GFF2923 0.20 -2.7 8,257 - GFF2923 0.20 -2.7 8,257 - GFF2923 0.20 -2.3 8,379 + GFF2923 0.43 -4.0 8,379 + GFF2923 0.43 -2.7 8,380 - GFF2923 0.43 -3.7 8,380 - GFF2923 0.43 -1.8 8,421 + GFF2923 0.51 -1.6 8,421 + GFF2923 0.51 -2.3 8,421 + GFF2923 0.51 -2.3 8,421 + GFF2923 0.51 -3.7 8,421 + GFF2923 0.51 -2.3 8,422 - GFF2923 0.51 -5.9 8,431 - GFF2923 0.53 -1.3 8,431 - GFF2923 0.53 -0.6 8,703 + -0.0 8,703 + -0.4 8,703 + +1.5 8,703 + -1.8 8,703 + +0.4 8,703 + +0.2 8,703 + +0.1 8,703 + -0.6 8,703 + +0.2 8,703 + -0.2 8,703 + -0.3 8,703 + +0.3 8,703 + -0.3 8,703 + +0.9 8,704 - -1.1 8,704 - +0.2 8,704 - -0.3 8,704 - -0.2 8,704 - -0.2 8,704 - +0.0 8,704 - -0.1 9,264 + GFF2924 0.72 +0.7 9,264 + GFF2924 0.72 -0.3 9,264 + GFF2924 0.72 -0.0 9,264 + GFF2924 0.72 -0.1 9,264 + GFF2924 0.72 -0.4 9,264 + GFF2924 0.72 +1.0 9,264 + GFF2924 0.72 +0.7 9,265 - GFF2924 0.72 +0.4 9,265 - GFF2924 0.72 +0.7 9,265 - GFF2924 0.72 +0.5 9,265 - GFF2924 0.72 +0.0 9,265 - GFF2924 0.72 +0.1 9,265 - GFF2924 0.72 +0.4 9,333 + GFF2924 0.82 -0.1 9,333 + GFF2924 0.82 +0.5 9,333 + GFF2924 0.82 +0.1 9,333 + GFF2924 0.82 -0.4 9,333 + GFF2924 0.82 -0.1 9,333 + GFF2924 0.82 +0.2 9,333 + GFF2924 0.82 +0.5 9,334 - GFF2924 0.82 +0.3 9,334 - GFF2924 0.82 +0.0 9,334 - GFF2924 0.82 -0.1 9,334 - GFF2924 0.82 -0.0 9,334 - GFF2924 0.82 -1.7 9,334 - GFF2924 0.82 +1.4 9,363 + GFF2924 0.86 -0.3 9,363 + GFF2924 0.86 -0.7 9,363 + GFF2924 0.86 -0.4 9,363 + GFF2924 0.86 -1.4 9,363 + GFF2924 0.86 +1.2 9,363 + GFF2924 0.86 -0.5 9,364 - GFF2924 0.87 +0.1 9,364 - GFF2924 0.87 +0.4 9,364 - GFF2924 0.87 -0.7 9,364 - GFF2924 0.87 -0.6 9,364 - GFF2924 0.87 +0.1 9,364 - GFF2924 0.87 -0.7 9,364 - GFF2924 0.87 -0.8 9,364 - GFF2924 0.87 +0.0 9,364 - GFF2924 0.87 +0.3 9,456 + -0.8 9,456 + +0.0 9,456 + +0.2 9,457 - +0.7 9,488 - +0.2 9,529 + +0.4 9,529 + +0.5 9,530 - GFF2925 0.10 -0.3 9,530 - GFF2925 0.10 -0.3 9,530 - GFF2925 0.10 +1.2 9,538 + GFF2925 0.12 +1.0 9,539 - GFF2925 0.12 -0.0
Or see this region's nucleotide sequence