Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2815 and GFF2816 are separated by 175 nucleotides GFF2816 and GFF2817 are separated by 9 nucleotides GFF2817 and GFF2818 overlap by 4 nucleotides GFF2818 and GFF2819 are separated by 8 nucleotides
GFF2815 - Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 414,203 to 415,798
GFF2815
GFF2816 - LSU ribosomal protein L14p (L23e), at 415,974 to 416,342
GFF2816
GFF2817 - LSU ribosomal protein L24p (L26e), at 416,352 to 416,672
GFF2817
GFF2818 - LSU ribosomal protein L5p (L11e), at 416,669 to 417,214
GFF2818
GFF2819 - SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent, at 417,223 to 417,528
GFF2819
Position (kb) 415
416
417 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.349 kb on + strand, within GFF2815 at 415.350 kb on - strand, within GFF2815 at 415.350 kb on - strand, within GFF2815 at 415.503 kb on + strand, within GFF2815 at 415.503 kb on + strand, within GFF2815 at 415.503 kb on + strand, within GFF2815 at 415.503 kb on + strand, within GFF2815 at 415.504 kb on - strand, within GFF2815 at 415.769 kb on + strand at 415.769 kb on + strand at 415.769 kb on + strand at 415.770 kb on - strand at 415.854 kb on + strand at 415.854 kb on + strand at 415.854 kb on + strand at 415.854 kb on + strand at 415.855 kb on - strand at 415.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 415,349 + GFF2815 0.72 -0.8 415,350 - GFF2815 0.72 -0.8 415,350 - GFF2815 0.72 -1.3 415,503 + GFF2815 0.81 +0.3 415,503 + GFF2815 0.81 -0.3 415,503 + GFF2815 0.81 -1.9 415,503 + GFF2815 0.81 -1.4 415,504 - GFF2815 0.82 -0.8 415,769 + +1.9 415,769 + +0.2 415,769 + -0.5 415,770 - -1.1 415,854 + -0.6 415,854 + -0.2 415,854 + -0.3 415,854 + -0.0 415,855 - +0.1 415,966 + -1.2
Or see this region's nucleotide sequence