Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF270 and GFF271 are separated by 68 nucleotides GFF271 and GFF272 are separated by 17 nucleotides GFF272 and GFF273 overlap by 4 nucleotides
GFF270 - Transcriptional regulator, LysR family, at 283,079 to 284,062
GFF270
GFF271 - amidohydrolase 2, at 284,131 to 285,051
GFF271
GFF272 - 4,5-dihydroxyphthalate decarboxylase (EC 4.1.1.55), at 285,069 to 285,995
GFF272
GFF273 - Tricarboxylate transport protein TctC, at 285,992 to 286,954
GFF273
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 283.275 kb on + strand, within GFF270 at 283.275 kb on + strand, within GFF270 at 283.276 kb on - strand, within GFF270 at 283.276 kb on - strand, within GFF270 at 283.276 kb on - strand, within GFF270 at 283.276 kb on - strand, within GFF270 at 284.081 kb on + strand at 284.081 kb on + strand at 284.093 kb on - strand at 284.098 kb on + strand at 284.297 kb on - strand, within GFF271 at 284.297 kb on - strand, within GFF271 at 284.297 kb on - strand, within GFF271 at 284.368 kb on + strand, within GFF271 at 284.386 kb on + strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.587 kb on + strand, within GFF271 at 284.588 kb on - strand, within GFF271 at 284.732 kb on - strand, within GFF271 at 284.732 kb on - strand, within GFF271 at 284.788 kb on + strand, within GFF271 at 284.788 kb on + strand, within GFF271 at 284.788 kb on + strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 285.102 kb on + strand at 285.102 kb on + strand at 285.103 kb on - strand at 285.336 kb on + strand, within GFF272 at 285.336 kb on + strand, within GFF272 at 285.336 kb on + strand, within GFF272 at 285.573 kb on + strand, within GFF272 at 285.574 kb on - strand, within GFF272
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 283,275 + GFF270 0.20 -0.2 283,275 + GFF270 0.20 +0.0 283,276 - GFF270 0.20 -0.2 283,276 - GFF270 0.20 -0.2 283,276 - GFF270 0.20 -0.4 283,276 - GFF270 0.20 +0.0 284,081 + +0.1 284,081 + +0.2 284,093 - +0.6 284,098 + -0.9 284,297 - GFF271 0.18 -0.2 284,297 - GFF271 0.18 +0.1 284,297 - GFF271 0.18 -0.7 284,368 + GFF271 0.26 +2.3 284,386 + GFF271 0.28 -0.3 284,387 - GFF271 0.28 +0.2 284,387 - GFF271 0.28 +0.3 284,387 - GFF271 0.28 -0.4 284,387 - GFF271 0.28 -2.8 284,587 + GFF271 0.50 -0.2 284,588 - GFF271 0.50 -0.3 284,732 - GFF271 0.65 -0.6 284,732 - GFF271 0.65 -0.1 284,788 + GFF271 0.71 +0.0 284,788 + GFF271 0.71 +0.1 284,788 + GFF271 0.71 -0.1 284,789 - GFF271 0.71 +0.3 284,789 - GFF271 0.71 +0.7 284,789 - GFF271 0.71 -0.4 284,789 - GFF271 0.71 -0.6 284,789 - GFF271 0.71 -0.0 285,102 + -0.6 285,102 + +1.0 285,103 - +0.0 285,336 + GFF272 0.29 -0.3 285,336 + GFF272 0.29 -0.3 285,336 + GFF272 0.29 +0.2 285,573 + GFF272 0.54 -0.0 285,574 - GFF272 0.54 +0.7
Or see this region's nucleotide sequence