Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2550 and GFF2551 overlap by 13 nucleotides GFF2551 and GFF2552 overlap by 4 nucleotides GFF2552 and GFF2553 overlap by 4 nucleotides
GFF2550 - hypothetical protein, at 137,642 to 138,967
GFF2550
GFF2551 - Putative aldo/keto reductase, at 138,955 to 139,893
GFF2551
GFF2552 - Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site, at 139,890 to 141,482
GFF2552
GFF2553 - hypothetical protein, at 141,479 to 142,801
GFF2553
Position (kb) 139
140
141
142 Strain fitness (log2 ratio) -2
-1
0
1 at 138.897 kb on + strand at 138.898 kb on - strand at 138.898 kb on - strand at 138.898 kb on - strand at 138.898 kb on - strand at 138.915 kb on + strand at 139.124 kb on + strand, within GFF2551 at 139.125 kb on - strand, within GFF2551 at 139.316 kb on + strand, within GFF2551 at 139.350 kb on - strand, within GFF2551 at 139.403 kb on + strand, within GFF2551 at 139.403 kb on + strand, within GFF2551 at 139.967 kb on - strand at 139.967 kb on - strand at 140.092 kb on + strand, within GFF2552 at 140.092 kb on + strand, within GFF2552 at 140.092 kb on + strand, within GFF2552 at 140.093 kb on - strand, within GFF2552 at 140.093 kb on - strand, within GFF2552 at 140.393 kb on - strand, within GFF2552 at 140.393 kb on - strand, within GFF2552 at 140.620 kb on + strand, within GFF2552 at 140.620 kb on + strand, within GFF2552 at 140.621 kb on - strand, within GFF2552 at 141.127 kb on + strand, within GFF2552 at 141.148 kb on + strand, within GFF2552 at 141.804 kb on + strand, within GFF2553 at 141.804 kb on + strand, within GFF2553 at 141.805 kb on - strand, within GFF2553 at 141.805 kb on - strand, within GFF2553 at 141.862 kb on - strand, within GFF2553 at 141.975 kb on + strand, within GFF2553 at 142.185 kb on + strand, within GFF2553 at 142.296 kb on + strand, within GFF2553 at 142.296 kb on + strand, within GFF2553 at 142.296 kb on + strand, within GFF2553 at 142.297 kb on - strand, within GFF2553 at 142.329 kb on + strand, within GFF2553 at 142.329 kb on + strand, within GFF2553 at 142.329 kb on + strand, within GFF2553
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 138,897 + -0.7 138,898 - +0.2 138,898 - -0.5 138,898 - -0.2 138,898 - +0.4 138,915 + -0.1 139,124 + GFF2551 0.18 +0.0 139,125 - GFF2551 0.18 -0.0 139,316 + GFF2551 0.38 -0.2 139,350 - GFF2551 0.42 -0.5 139,403 + GFF2551 0.48 -0.5 139,403 + GFF2551 0.48 +1.1 139,967 - +0.2 139,967 - -0.5 140,092 + GFF2552 0.13 -0.3 140,092 + GFF2552 0.13 +0.5 140,092 + GFF2552 0.13 +1.3 140,093 - GFF2552 0.13 -0.1 140,093 - GFF2552 0.13 +0.9 140,393 - GFF2552 0.32 -0.1 140,393 - GFF2552 0.32 +0.6 140,620 + GFF2552 0.46 +0.8 140,620 + GFF2552 0.46 -0.1 140,621 - GFF2552 0.46 -2.5 141,127 + GFF2552 0.78 +0.0 141,148 + GFF2552 0.79 -0.0 141,804 + GFF2553 0.25 +0.1 141,804 + GFF2553 0.25 -0.1 141,805 - GFF2553 0.25 +0.3 141,805 - GFF2553 0.25 +0.2 141,862 - GFF2553 0.29 -0.0 141,975 + GFF2553 0.37 -0.4 142,185 + GFF2553 0.53 +0.1 142,296 + GFF2553 0.62 -0.7 142,296 + GFF2553 0.62 +0.2 142,296 + GFF2553 0.62 -0.9 142,297 - GFF2553 0.62 +0.8 142,329 + GFF2553 0.64 +0.2 142,329 + GFF2553 0.64 +0.2 142,329 + GFF2553 0.64 -0.1
Or see this region's nucleotide sequence