Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2544 and GFF2545 are separated by 10 nucleotides GFF2545 and GFF2546 overlap by 8 nucleotides GFF2546 and GFF2547 overlap by 4 nucleotides
GFF2544 - Beta 1,4 glucosyltransferase, at 131,864 to 132,847
GFF2544
GFF2545 - putative NADH dehydrogenase/NAD(P)H nitroreductase, at 132,858 to 133,814
GFF2545
GFF2546 - Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-), at 133,807 to 134,379
GFF2546
GFF2547 - hypothetical protein, at 134,376 to 135,527
GFF2547
Position (kb) 132
133
134 Strain fitness (log2 ratio) -1
0
1 at 132.076 kb on - strand, within GFF2544 at 132.120 kb on + strand, within GFF2544 at 132.135 kb on + strand, within GFF2544 at 132.171 kb on + strand, within GFF2544 at 132.172 kb on - strand, within GFF2544 at 132.297 kb on + strand, within GFF2544 at 132.298 kb on - strand, within GFF2544 at 132.298 kb on - strand, within GFF2544 at 132.321 kb on + strand, within GFF2544 at 132.820 kb on - strand at 133.102 kb on + strand, within GFF2545 at 133.102 kb on + strand, within GFF2545 at 133.103 kb on - strand, within GFF2545 at 133.103 kb on - strand, within GFF2545 at 133.240 kb on + strand, within GFF2545 at 133.241 kb on - strand, within GFF2545 at 133.241 kb on - strand, within GFF2545 at 133.528 kb on + strand, within GFF2545 at 133.529 kb on - strand, within GFF2545 at 133.842 kb on - strand at 134.108 kb on + strand, within GFF2546 at 134.108 kb on + strand, within GFF2546 at 134.109 kb on - strand, within GFF2546 at 134.109 kb on - strand, within GFF2546 at 134.708 kb on - strand, within GFF2547
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 132,076 - GFF2544 0.22 -0.7 132,120 + GFF2544 0.26 -0.0 132,135 + GFF2544 0.28 -1.1 132,171 + GFF2544 0.31 -0.2 132,172 - GFF2544 0.31 -0.5 132,297 + GFF2544 0.44 +0.1 132,298 - GFF2544 0.44 +0.0 132,298 - GFF2544 0.44 +0.8 132,321 + GFF2544 0.46 +0.5 132,820 - +0.6 133,102 + GFF2545 0.25 +0.1 133,102 + GFF2545 0.25 -0.1 133,103 - GFF2545 0.26 -0.1 133,103 - GFF2545 0.26 -0.1 133,240 + GFF2545 0.40 +0.6 133,241 - GFF2545 0.40 -0.4 133,241 - GFF2545 0.40 +0.6 133,528 + GFF2545 0.70 -0.9 133,529 - GFF2545 0.70 +0.6 133,842 - -0.2 134,108 + GFF2546 0.53 -0.2 134,108 + GFF2546 0.53 -1.4 134,109 - GFF2546 0.53 -0.2 134,109 - GFF2546 0.53 -0.4 134,708 - GFF2547 0.29 -0.8
Or see this region's nucleotide sequence