Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2497 and GFF2498 are separated by 10 nucleotides GFF2498 and GFF2499 are separated by 95 nucleotides GFF2499 and GFF2500 are separated by 154 nucleotides
GFF2497 - Sensor protein basS/pmrB (EC 2.7.3.-), at 83,786 to 85,270
GFF2497
GFF2498 - Response regulator receiver:Transcriptional regulatory protein, C- terminal, at 85,281 to 85,955
GFF2498
GFF2499 - Transcriptional regulator, MarR family, at 86,051 to 86,548
GFF2499
GFF2500 - RecA protein, at 86,703 to 87,818
GFF2500
Position (kb) 85
86 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 84.813 kb on + strand, within GFF2497 at 84.951 kb on + strand, within GFF2497 at 84.951 kb on + strand, within GFF2497 at 84.952 kb on - strand, within GFF2497 at 84.952 kb on - strand, within GFF2497 at 84.954 kb on + strand, within GFF2497 at 84.954 kb on + strand, within GFF2497 at 84.954 kb on + strand, within GFF2497 at 84.954 kb on + strand, within GFF2497 at 85.306 kb on + strand at 85.375 kb on + strand, within GFF2498 at 85.375 kb on + strand, within GFF2498 at 85.375 kb on + strand, within GFF2498 at 85.375 kb on + strand, within GFF2498 at 85.375 kb on + strand, within GFF2498 at 85.376 kb on - strand, within GFF2498 at 85.376 kb on - strand, within GFF2498 at 85.376 kb on - strand, within GFF2498 at 85.552 kb on + strand, within GFF2498 at 85.553 kb on - strand, within GFF2498 at 85.553 kb on - strand, within GFF2498 at 85.660 kb on + strand, within GFF2498 at 85.660 kb on + strand, within GFF2498 at 85.660 kb on + strand, within GFF2498 at 85.661 kb on - strand, within GFF2498 at 85.661 kb on - strand, within GFF2498 at 85.661 kb on - strand, within GFF2498 at 85.661 kb on - strand, within GFF2498 at 85.675 kb on + strand, within GFF2498 at 85.676 kb on - strand, within GFF2498 at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.098 kb on - strand at 86.098 kb on - strand at 86.098 kb on - strand at 86.098 kb on - strand at 86.573 kb on + strand at 86.581 kb on - strand at 86.598 kb on + strand at 86.627 kb on + strand at 86.627 kb on + strand at 86.627 kb on + strand at 86.627 kb on - strand at 86.628 kb on - strand at 86.655 kb on - strand at 86.662 kb on + strand at 86.662 kb on + strand at 86.922 kb on + strand, within GFF2500
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 84,813 + GFF2497 0.69 -0.5 84,951 + GFF2497 0.78 -2.4 84,951 + GFF2497 0.78 -2.8 84,952 - GFF2497 0.79 -1.7 84,952 - GFF2497 0.79 -0.9 84,954 + GFF2497 0.79 -0.1 84,954 + GFF2497 0.79 -2.3 84,954 + GFF2497 0.79 -1.9 84,954 + GFF2497 0.79 -1.4 85,306 + -1.9 85,375 + GFF2498 0.14 -4.2 85,375 + GFF2498 0.14 -3.2 85,375 + GFF2498 0.14 -5.2 85,375 + GFF2498 0.14 -2.6 85,375 + GFF2498 0.14 -3.9 85,376 - GFF2498 0.14 -2.3 85,376 - GFF2498 0.14 -1.9 85,376 - GFF2498 0.14 -2.7 85,552 + GFF2498 0.40 -2.7 85,553 - GFF2498 0.40 -3.6 85,553 - GFF2498 0.40 -2.5 85,660 + GFF2498 0.56 -5.9 85,660 + GFF2498 0.56 -0.4 85,660 + GFF2498 0.56 -2.9 85,661 - GFF2498 0.56 -0.9 85,661 - GFF2498 0.56 -4.3 85,661 - GFF2498 0.56 -3.6 85,661 - GFF2498 0.56 -4.8 85,675 + GFF2498 0.58 -3.8 85,676 - GFF2498 0.59 -5.0 86,097 + -0.2 86,097 + -0.2 86,097 + -0.3 86,097 + +0.4 86,097 + +0.1 86,097 + -0.7 86,098 - +0.3 86,098 - +0.1 86,098 - +0.6 86,098 - +0.2 86,573 + -0.4 86,581 - -0.4 86,598 + -1.7 86,627 + -0.9 86,627 + +0.2 86,627 + -0.4 86,627 - -0.9 86,628 - -0.4 86,655 - +0.3 86,662 + +0.3 86,662 + +0.5 86,922 + GFF2500 0.20 -2.2
Or see this region's nucleotide sequence