Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2454 and GFF2455 are separated by 170 nucleotides GFF2455 and GFF2456 are separated by 12 nucleotides GFF2456 and GFF2457 are separated by 9 nucleotides
GFF2454 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 36,872 to 37,009
GFF2454
GFF2455 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 37,180 to 38,682
GFF2455
GFF2456 - Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23); putative, at 38,695 to 39,552
GFF2456
GFF2457 - hypothetical protein, at 39,562 to 40,086
GFF2457
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.007 kb on + strand at 37.008 kb on - strand at 37.096 kb on + strand at 37.096 kb on + strand at 37.096 kb on + strand at 37.097 kb on - strand at 37.097 kb on - strand at 37.097 kb on - strand at 37.097 kb on - strand at 37.097 kb on - strand at 37.098 kb on + strand at 37.099 kb on - strand at 37.099 kb on - strand at 37.285 kb on + strand at 37.285 kb on + strand at 37.285 kb on + strand at 37.285 kb on + strand at 37.285 kb on + strand at 37.286 kb on - strand at 37.286 kb on - strand at 37.534 kb on + strand, within GFF2455 at 37.534 kb on + strand, within GFF2455 at 37.534 kb on + strand, within GFF2455 at 37.534 kb on + strand, within GFF2455 at 37.535 kb on - strand, within GFF2455 at 37.535 kb on - strand, within GFF2455 at 37.535 kb on - strand, within GFF2455 at 37.621 kb on + strand, within GFF2455 at 37.621 kb on + strand, within GFF2455 at 37.622 kb on - strand, within GFF2455 at 37.622 kb on - strand, within GFF2455 at 37.657 kb on + strand, within GFF2455 at 37.768 kb on + strand, within GFF2455 at 37.768 kb on + strand, within GFF2455 at 37.769 kb on - strand, within GFF2455 at 37.769 kb on - strand, within GFF2455 at 37.769 kb on - strand, within GFF2455 at 37.840 kb on + strand, within GFF2455 at 37.840 kb on + strand, within GFF2455 at 37.840 kb on + strand, within GFF2455 at 37.841 kb on - strand, within GFF2455 at 37.841 kb on - strand, within GFF2455 at 37.841 kb on - strand, within GFF2455 at 37.841 kb on - strand, within GFF2455 at 37.842 kb on - strand, within GFF2455 at 38.098 kb on + strand, within GFF2455 at 38.098 kb on + strand, within GFF2455 at 38.098 kb on + strand, within GFF2455 at 38.098 kb on + strand, within GFF2455 at 38.099 kb on - strand, within GFF2455 at 38.099 kb on - strand, within GFF2455 at 38.272 kb on + strand, within GFF2455 at 38.273 kb on - strand, within GFF2455 at 38.629 kb on + strand at 38.630 kb on - strand at 38.630 kb on - strand at 38.813 kb on + strand, within GFF2456 at 38.813 kb on + strand, within GFF2456 at 38.814 kb on - strand, within GFF2456 at 38.834 kb on - strand, within GFF2456 at 38.884 kb on + strand, within GFF2456 at 38.884 kb on + strand, within GFF2456 at 38.884 kb on + strand, within GFF2456 at 39.244 kb on + strand, within GFF2456 at 39.244 kb on + strand, within GFF2456 at 39.244 kb on + strand, within GFF2456 at 39.245 kb on - strand, within GFF2456 at 39.245 kb on - strand, within GFF2456 at 39.245 kb on - strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.364 kb on + strand, within GFF2456 at 39.365 kb on - strand, within GFF2456 at 39.365 kb on - strand, within GFF2456 at 39.365 kb on - strand, within GFF2456 at 39.365 kb on - strand, within GFF2456 at 39.365 kb on - strand, within GFF2456 at 39.463 kb on + strand, within GFF2456 at 39.464 kb on - strand, within GFF2456 at 39.464 kb on - strand, within GFF2456 at 39.502 kb on + strand at 39.502 kb on + strand at 39.503 kb on - strand at 39.503 kb on - strand at 39.503 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 37,007 + +0.1 37,008 - -0.8 37,096 + +0.2 37,096 + -0.0 37,096 + +0.6 37,097 - +0.1 37,097 - +0.6 37,097 - +0.4 37,097 - +0.6 37,097 - -0.1 37,098 + -1.1 37,099 - +0.6 37,099 - -0.5 37,285 + -0.0 37,285 + -0.4 37,285 + +0.8 37,285 + -0.2 37,285 + -0.5 37,286 - -0.1 37,286 - -0.3 37,534 + GFF2455 0.24 -0.2 37,534 + GFF2455 0.24 +0.2 37,534 + GFF2455 0.24 -0.6 37,534 + GFF2455 0.24 -0.4 37,535 - GFF2455 0.24 -0.8 37,535 - GFF2455 0.24 -0.6 37,535 - GFF2455 0.24 -0.6 37,621 + GFF2455 0.29 +1.2 37,621 + GFF2455 0.29 -2.2 37,622 - GFF2455 0.29 +0.1 37,622 - GFF2455 0.29 -0.6 37,657 + GFF2455 0.32 +0.6 37,768 + GFF2455 0.39 +0.2 37,768 + GFF2455 0.39 +0.1 37,769 - GFF2455 0.39 -0.2 37,769 - GFF2455 0.39 -1.5 37,769 - GFF2455 0.39 -0.2 37,840 + GFF2455 0.44 -0.9 37,840 + GFF2455 0.44 -0.0 37,840 + GFF2455 0.44 +0.1 37,841 - GFF2455 0.44 +1.5 37,841 - GFF2455 0.44 +1.3 37,841 - GFF2455 0.44 -0.4 37,841 - GFF2455 0.44 -0.3 37,842 - GFF2455 0.44 -0.8 38,098 + GFF2455 0.61 -1.7 38,098 + GFF2455 0.61 -1.4 38,098 + GFF2455 0.61 -1.9 38,098 + GFF2455 0.61 -0.3 38,099 - GFF2455 0.61 -0.5 38,099 - GFF2455 0.61 +0.1 38,272 + GFF2455 0.73 -0.6 38,273 - GFF2455 0.73 +0.5 38,629 + +2.0 38,630 - +0.3 38,630 - +0.4 38,813 + GFF2456 0.14 +0.1 38,813 + GFF2456 0.14 -0.4 38,814 - GFF2456 0.14 -0.8 38,834 - GFF2456 0.16 -0.1 38,884 + GFF2456 0.22 +0.9 38,884 + GFF2456 0.22 +0.1 38,884 + GFF2456 0.22 +0.8 39,244 + GFF2456 0.64 -0.1 39,244 + GFF2456 0.64 -0.0 39,244 + GFF2456 0.64 +0.1 39,245 - GFF2456 0.64 -0.2 39,245 - GFF2456 0.64 +0.2 39,245 - GFF2456 0.64 +0.2 39,364 + GFF2456 0.78 +0.3 39,364 + GFF2456 0.78 -0.4 39,364 + GFF2456 0.78 +0.6 39,364 + GFF2456 0.78 -0.2 39,364 + GFF2456 0.78 -0.2 39,364 + GFF2456 0.78 +1.9 39,365 - GFF2456 0.78 +0.1 39,365 - GFF2456 0.78 +0.1 39,365 - GFF2456 0.78 -0.2 39,365 - GFF2456 0.78 +0.1 39,365 - GFF2456 0.78 -1.2 39,463 + GFF2456 0.90 +0.0 39,464 - GFF2456 0.90 -0.7 39,464 - GFF2456 0.90 -0.2 39,502 + -0.0 39,502 + -0.8 39,503 - -0.1 39,503 - +0.6 39,503 - -0.6
Or see this region's nucleotide sequence